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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0233200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0356) R2 : 0.255
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.14 (0.0925) R2dC : 0.248 R2C : 0.241
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0748) R2dN8 : 0.014 R2N8 : 0.00734
σ : 0.671
deviance : 205.63
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.91 0.642 3.39 0.43 1.13 1.14 1.84 0.659 0.249 19 1015 671 -- --
187.04 0.637 3.39 0.428 1.12 1.16 1.82 -- 0.252 19 1015 621 -- --
195.64 0.651 3.39 0.405 1.13 1.17 -- 0.83 0.255 19 1015 699 -- --
195.93 0.652 3.38 0.402 1.14 1.12 -- -- 0.254 19 1015 640 -- --
262.91 0.755 3.36 0.366 -- 1.32 -- 0.935 0.233 -- 1015 647 -- --
192.77 0.651 3.39 0.397 1.13 -- 1.9 -- 0.228 19.1 -- -- -- --
202.22 0.666 3.39 0.36 1.14 -- -- -- 0.233 19 -- -- -- --
263.23 0.756 3.36 0.372 -- 1.28 -- -- 0.235 -- 1015 603 -- --
200.08 0.659 3.39 -- 1.12 1.15 -- -- 0.214 18.9 1015 601 -- --
270.63 0.769 3.37 0.337 -- -- -- -- 0.212 -- -- -- -- --
205.63 0.671 3.4 -- 1.14 -- -- -- 0.193 19.1 -- -- -- --
266.76 0.761 3.37 -- -- 1.27 -- -- 0.192 -- 1015 570 -- --
273.63 0.772 3.37 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.30 wind 1.0 90 < th dose independent rect. 2 1
2 177.04 wind 1.0 90 < th dose dependent rect. 2 1
3 178.89 temperature 20.0 10 > th dose dependent rect. 20 4
6 179.99 temperature 20.0 10 > th dose dependent rect. 20 6
8 180.17 temperature 25.0 270 > th dose dependent rect. 20 1
11 180.43 temperature 25.0 270 > th dose independent rect. 19 3
12 180.63 temperature 20.0 10 > th dose independent rect. 20 4
16 180.93 temperature 25.0 270 > th dose independent rect. 20 1
27 181.27 temperature 15.0 30 > th dose dependent rect. 20 17
35 181.45 temperature 20.0 10 > th dose independent rect. 8 16
47 181.82 wind 1.0 90 < th dose independent rect. 24 3
51 181.87 atmosphere 1010.0 270 < th dose independent rect. 17 6
52 181.92 atmosphere 1010.0 270 < th dose independent rect. 19 2
53 181.94 atmosphere 1010.0 270 < th dose independent rect. 18 4
63 182.16 atmosphere 1015.0 90 < th dose independent rect. 3 23
65 182.18 atmosphere 1005.0 90 > th dose dependent rect. 23 7
69 182.31 atmosphere 1005.0 10 > th dose dependent rect. 23 7
71 182.35 atmosphere 1010.0 10 < th dose independent rect. 20 4
77 182.55 atmosphere 1015.0 270 < th dose dependent rect. 18 5
102 182.85 atmosphere 1015.0 270 < th dose dependent rect. 19 3
103 182.86 atmosphere 1005.0 270 > th dose dependent rect. 23 1
109 182.89 atmosphere 1015.0 10 < th dose independent rect. 20 17
117 182.93 atmosphere 1010.0 10 < th dose independent rect. 20 6
129 183.02 atmosphere 1000.0 10 > th dose dependent rect. 23 9
131 183.03 atmosphere 1015.0 10 < th dose dependent rect. 20 4
138 183.08 temperature 25.0 270 > th dose dependent rect. 19 14
158 183.24 wind 7.0 90 > th dose dependent rect. 12 1
170 183.33 temperature 25.0 270 > th dose dependent rect. 18 16
175 183.38 atmosphere 1015.0 10 < th dose dependent rect. 20 6
180 183.42 temperature 25.0 30 > th dose independent rect. 20 17
183 183.43 atmosphere 1015.0 270 < th dose independent rect. 18 16
244 183.89 temperature 25.0 30 > th dose independent rect. 20 15
248 183.90 atmosphere 1000.0 30 > th dose dependent rect. 13 15
281 184.12 wind 7.0 90 > th dose independent rect. 12 1
287 184.14 temperature 25.0 90 > th dose dependent rect. 20 10
316 184.30 temperature 20.0 10 > th dose independent rect. 4 22
323 184.32 atmosphere 995.0 10 > th dose dependent rect. 23 21
324 184.33 atmosphere 1015.0 10 < th dose independent rect. 15 23
335 184.38 atmosphere 1005.0 90 > th dose independent rect. 2 1
336 184.38 wind 1.0 90 < th dose dependent rect. 24 3
339 184.40 temperature 20.0 30 > th dose independent rect. 15 9
343 184.41 temperature 20.0 90 < th dose dependent rect. 5 19
368 184.51 wind 9.0 10 > th dose independent rect. 13 1
378 184.51 atmosphere 1005.0 10 > th dose independent rect. 2 2
394 184.51 atmosphere 1005.0 270 > th dose dependent rect. 11 17
399 184.53 temperature 20.0 30 > th dose independent rect. 4 20
418 184.59 temperature 20.0 10 < th dose dependent rect. 5 19
432 184.64 atmosphere 995.0 90 > th dose independent rect. 23 21
462 184.71 atmosphere 1015.0 270 < th dose independent rect. 8 14
486 184.78 temperature 20.0 10 < th dose dependent sin 21 NA
490 184.79 wind 1.0 90 < th dose independent rect. 7 21
495 184.81 atmosphere 1015.0 270 < th dose independent rect. 15 22
498 184.81 atmosphere 1005.0 10 > th dose dependent rect. 13 17
510 184.85 temperature 10.0 10 > th dose dependent rect. 4 22
513 184.87 temperature 25.0 270 > th dose independent rect. 17 17
560 184.98 atmosphere 1005.0 30 > th dose independent rect. 13 7
574 185.01 wind 1.0 90 > th dose independent rect. 20 3
575 185.01 temperature 25.0 30 > th dose independent rect. 15 22
582 185.02 atmosphere 1015.0 10 < th dose dependent rect. 20 17
584 185.03 temperature 25.0 30 > th dose independent rect. 20 11
589 185.05 wind 5.0 90 < th dose independent rect. 20 3
599 185.07 temperature 20.0 10 > th dose independent rect. 6 18
623 185.11 wind 1.0 90 < th dose independent rect. 9 19
624 185.11 temperature 25.0 90 > th dose dependent sin 10 NA
625 185.11 wind 7.0 1440 > th dose dependent rect. 4 1
629 185.12 wind 7.0 1440 > th dose independent rect. 4 1
643 185.13 atmosphere 1005.0 30 > th dose independent rect. 13 15
672 185.20 wind 9.0 1440 < th dose independent rect. 24 9
679 185.21 humidity 50.0 10 > th dose independent rect. 20 17
705 185.27 temperature 25.0 10 > th dose dependent rect. 20 9
710 185.28 atmosphere 1010.0 30 < th dose independent rect. 15 11
756 185.36 humidity 90.0 90 < th dose independent rect. 20 3
762 185.37 temperature 20.0 90 > th dose independent rect. 2 1
778 185.39 atmosphere 1005.0 30 > th dose dependent rect. 13 7
819 185.46 atmosphere 995.0 10 > th dose independent rect. 13 7
820 185.46 wind 1.0 90 < th dose independent rect. 13 14
822 185.46 wind 9.0 90 < th dose dependent rect. 20 3
826 185.47 atmosphere 1010.0 30 < th dose independent rect. 15 9
835 185.48 temperature 15.0 30 > th dose dependent rect. 15 22
849 185.51 wind 7.0 1440 > th dose independent rect. 22 1
871 185.54 wind 7.0 1440 < th dose independent rect. 22 2
876 185.54 temperature 20.0 30 < th dose dependent rect. 11 13
891 185.56 wind 1.0 90 > th dose independent rect. 8 15
892 185.56 wind 1.0 90 < th dose independent rect. 11 17
893 185.56 wind 7.0 1440 > th dose dependent rect. 22 1
906 185.57 atmosphere 1015.0 270 < th dose independent rect. 1 23
914 185.59 temperature 25.0 30 > th dose independent sin 9 NA
915 185.59 humidity 70.0 90 > th dose independent rect. 19 4
918 185.59 radiation 10.0 43200 < th dose dependent rect. 21 3
935 185.62 atmosphere 1005.0 30 > th dose independent rect. 23 21
958 185.64 wind 1.0 90 < th dose independent rect. 17 10
977 185.66 precipitation 0.1 90 < th dose independent rect. 20 3
979 185.66 wind 1.0 90 > th dose independent rect. 19 18
980 185.66 precipitation 0.1 90 < th dose dependent rect. 20 3
981 185.66 atmosphere 1015.0 30 < th dose dependent rect. 8 16