Os12g0231700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0231700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.34 | 0.313 | 8.82 | -0.778 | 0.666 | 0.251 | -0.145 | 1.88 | 0.287 | 1.26 | 0.1034 | 5222 | -- | -- |
| 44.76 | 0.312 | 8.85 | -0.804 | 0.664 | 0.7 | -0.132 | -- | 0.298 | 1.2 | 0.5 | 2813 | -- | -- |
| 44.42 | 0.31 | 8.82 | -0.774 | 0.667 | 0.262 | -- | 1.85 | 0.288 | 1.24 | 0.08185 | 5292 | -- | -- |
| 44.86 | 0.312 | 8.86 | -0.802 | 0.666 | 0.685 | -- | -- | 0.294 | 1.27 | 0.5 | 2813 | -- | -- |
| 71.59 | 0.394 | 8.8 | -0.717 | -- | 0.172 | -- | 2.22 | 0.31 | -- | 0.1901 | 4844 | -- | -- |
| 53.47 | 0.343 | 8.86 | -0.593 | 0.681 | -- | -0.0676 | -- | 0.249 | 1.28 | -- | -- | -- | -- |
| 53.49 | 0.342 | 8.86 | -0.591 | 0.681 | -- | -- | -- | 0.249 | 1.28 | -- | -- | -- | -- |
| 71.99 | 0.395 | 8.85 | -0.77 | -- | 0.735 | -- | -- | 0.308 | -- | 0.5 | 2583 | -- | -- |
| 59.63 | 0.36 | 8.84 | -- | 0.658 | 0.375 | -- | -- | 0.336 | 1.21 | 0.5008 | 2882 | -- | -- |
| 82.09 | 0.423 | 8.85 | -0.564 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 62.69 | 0.37 | 8.85 | -- | 0.671 | -- | -- | -- | 0.315 | 1.25 | -- | -- | -- | -- |
| 86.13 | 0.432 | 8.83 | -- | -- | 0.47 | -- | -- | 0.367 | -- | 0.515 | 2402 | -- | -- |
| 90.49 | 0.444 | 8.84 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 2 | 42.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 3 | 42.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 4 | 42.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 9 | 43.01 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 13 | 43.01 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 46 | 43.16 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 10 |
| 49 | 43.19 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 50 | 43.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 68 | 43.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 71 | 43.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 74 | 43.32 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 91 | 43.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 92 | 43.36 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 98 | 43.36 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 102 | 43.37 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 133 | 43.47 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 138 | 43.47 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 143 | 43.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 164 | 43.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 165 | 43.55 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 168 | 43.55 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 169 | 43.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 171 | 43.56 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 229 | 43.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 270 | 43.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 275 | 43.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 343 | 43.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 413 | 44.07 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 442 | 44.15 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 567 | 44.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 581 | 44.45 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 582 | 44.45 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 591 | 44.47 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 592 | 44.47 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 653 | 44.51 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 687 | 44.54 | humidity | 60.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 693 | 44.55 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 759 | 44.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 778 | 44.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 785 | 44.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 789 | 44.57 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 808 | 44.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 812 | 44.58 | humidity | 60.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 818 | 44.58 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 857 | 44.58 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 866 | 44.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 909 | 44.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 914 | 44.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 19 |
| 944 | 44.61 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 954 | 44.62 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |