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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0230200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-dependent protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0472) R2 : 0.153
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.54 (0.171) R2dE : 0.156 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0428 (0.101) R2dN8 : 0.000449 R2N8 : -0.00252
σ : 0.883
deviance : 359.44
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999
memory length : 11755
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.63 0.866 2.99 0.356 0.25 1.22 0.375 4.52 0.0412 11.5 1002 5996 -- --
355.48 0.878 3.02 0.122 0.269 1.55 0.494 -- 0.0835 10.7 1000 12021 -- --
340.22 0.859 2.99 0.37 0.249 1.21 -- 4.52 0.0419 11.3 1001 5992 -- --
355.44 0.878 3.03 0.156 0.234 1.51 -- -- 0.0564 10.9 998.9 11707 -- --
344.06 0.864 3 0.361 -- 1.23 -- 4.55 0.0379 -- 1001 5964 -- --
413.35 0.953 3.06 0.434 0.257 -- 0.359 -- -0.0838 11.3 -- -- -- --
413.9 0.953 3.06 0.449 0.255 -- -- -- -0.0827 11.2 -- -- -- --
358.92 0.882 3.03 0.144 -- 1.5 -- -- 0.0544 -- 998.9 11739 -- --
356 0.879 3.03 -- 0.236 1.53 -- -- 0.0434 10.9 999 11749 -- --
417.98 0.955 3.06 0.443 -- -- -- -- -0.085 -- -- -- -- --
419.2 0.958 3.07 -- 0.251 -- -- -- -0.133 11.1 -- -- -- --
359.44 0.883 3.04 -- -- 1.54 -- -- 0.0428 -- 999 11755 -- --
423.14 0.96 3.08 -- -- -- -- -- -0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.75 humidity 90 1440 < th dose dependent rect. 22 9
2 325.96 humidity 90 1440 < th dose dependent rect. 3 1
3 326.14 wind 7 4320 < th dose independent rect. 18 3
9 328.62 humidity 70 1440 > th dose dependent rect. 22 9
12 328.76 wind 7 4320 > th dose independent rect. 18 3
13 328.80 wind 5 4320 > th dose dependent rect. 18 4
17 329.23 humidity 90 1440 < th dose dependent rect. 22 6
33 330.58 humidity 90 1440 < th dose dependent rect. 2 5
41 331.03 wind 9 4320 > th dose dependent rect. 20 2
48 331.13 wind 9 4320 > th dose dependent rect. 19 7
70 331.88 wind 9 4320 < th dose independent rect. 18 9
99 332.44 wind 9 4320 > th dose independent rect. 18 8
124 332.96 humidity 80 1440 < th dose independent rect. 21 4
130 333.17 wind 5 4320 > th dose independent rect. 21 1
140 333.49 humidity 90 1440 < th dose dependent rect. 23 2
165 334.20 temperature 20 720 < th dose independent rect. 18 1
184 334.64 humidity 80 1440 > th dose independent rect. 22 2
206 335.36 humidity 80 1440 < th dose independent rect. 22 1
217 335.51 humidity 50 1440 > th dose dependent rect. 23 2
246 336.65 temperature 20 720 < th dose independent rect. 9 11
271 337.43 humidity 70 1440 > th dose dependent rect. 3 1
295 338.34 humidity 90 1440 < th dose independent rect. 2 5
314 338.85 humidity 90 1440 < th dose dependent rect. 5 2
345 339.94 atmosphere 995 14400 > th dose independent rect. 17 1
346 339.95 humidity 80 1440 > th dose independent rect. 21 6
349 340.09 atmosphere 995 14400 < th dose independent rect. 18 1
352 340.09 atmosphere 995 14400 < th dose dependent rect. 18 1
395 340.69 humidity 80 10 < th dose independent rect. 20 11
399 340.82 humidity 90 1440 < th dose independent rect. 23 8
440 341.91 humidity 80 1440 > th dose independent rect. 21 10
445 342.00 wind 7 4320 < th dose independent rect. 8 1
475 342.84 humidity 80 1440 < th dose independent rect. 20 11
482 342.99 wind 7 1440 > th dose independent rect. 8 1
504 343.70 atmosphere 995 14400 > th dose independent rect. 13 7
544 343.97 atmosphere 995 14400 > th dose independent rect. 10 9
556 344.12 humidity 90 1440 > th dose independent rect. 5 1
569 344.21 humidity 80 270 < th dose dependent rect. 21 10
734 346.47 atmosphere 995 14400 > th dose independent rect. 24 16
737 346.50 atmosphere 995 14400 > th dose independent rect. 18 22
746 346.57 atmosphere 995 14400 < th dose independent rect. 18 22
750 346.60 atmosphere 995 14400 < th dose independent rect. 1 15
752 346.61 temperature 20 1440 > th dose independent rect. 18 1
807 346.90 atmosphere 995 14400 > th dose independent sin 4 NA
814 347.00 humidity 90 1440 > th dose independent rect. 4 3
839 347.15 atmosphere 995 14400 < th dose independent sin 4 NA
863 347.25 atmosphere 995 14400 < th dose dependent rect. 3 14
884 347.33 atmosphere 995 14400 < th dose dependent sin 1 NA
889 347.37 atmosphere 995 14400 > th dose independent sin 22 NA
906 347.47 humidity 80 270 < th dose dependent rect. 23 8
907 347.49 atmosphere 995 14400 < th dose independent sin 22 NA
973 347.64 atmosphere 995 14400 < th dose dependent sin 20 NA