Os12g0229100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0229100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.94 | 0.443 | 7.97 | -0.971 | 0.609 | 0.794 | 0.0683 | -1.91 | -5.35 | 9.05 | 12.54 | 1225 | -- | -- |
| 93.75 | 0.451 | 7.96 | -0.78 | 0.64 | 0.846 | 0.589 | -- | -5.26 | 9.09 | 11.2 | 1185 | -- | -- |
| 88.84 | 0.439 | 7.98 | -0.963 | 0.636 | 0.824 | -- | -1.95 | -5.36 | 8.97 | 12.35 | 1189 | -- | -- |
| 94.79 | 0.453 | 7.94 | -0.733 | 0.677 | 0.79 | -- | -- | -5.25 | 8.99 | 11.91 | 1172 | -- | -- |
| 101.18 | 0.468 | 7.97 | -0.879 | -- | 0.693 | -- | -1.13 | -5.31 | -- | 11.06 | 1444 | -- | -- |
| 108.08 | 0.487 | 7.9 | -0.573 | 0.381 | -- | 0.465 | -- | -5.06 | 8.46 | -- | -- | -- | -- |
| 108.75 | 0.488 | 7.9 | -0.559 | 0.382 | -- | -- | -- | -5.06 | 8.29 | -- | -- | -- | -- |
| 103.55 | 0.474 | 7.95 | -0.742 | -- | 0.696 | -- | -- | -5.25 | -- | 10.01 | 1519 | -- | -- |
| 104.82 | 0.477 | 7.94 | -- | 0.611 | 0.823 | -- | -- | -5.14 | 9.02 | 9.621 | 1189 | -- | -- |
| 116.82 | 0.505 | 7.91 | -0.557 | -- | -- | -- | -- | -5.06 | -- | -- | -- | -- | -- |
| 116.99 | 0.506 | 7.88 | -- | 0.379 | -- | -- | -- | -5 | 8.39 | -- | -- | -- | -- |
| 116.42 | 0.503 | 7.95 | -- | -- | 0.654 | -- | -- | -5.25 | -- | 19.68 | 1508 | -- | -- |
| 124.99 | 0.522 | 7.89 | -- | -- | -- | -- | -- | -5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 6 | 88.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 9 | 88.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 15 | 89.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 17 | 89.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 22 | 89.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 42 | 89.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 65 | 90.07 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 131 | 90.74 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 282 | 91.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 303 | 91.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 321 | 91.68 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 382 | 91.68 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 456 | 91.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 473 | 92.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 478 | 92.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 480 | 92.09 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 504 | 92.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 510 | 92.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 511 | 92.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 559 | 92.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 573 | 92.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 616 | 92.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 692 | 92.60 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 730 | 92.71 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 810 | 93.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 851 | 93.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 857 | 93.06 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 914 | 93.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 941 | 93.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 21 |