FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0228700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Jasmonate-induced protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0216) R2 : 0.0243
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.153 (0.0455) R2dN8 : 0.0314 R2N8 : 0.0243
σ : 0.407
deviance : 75.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.81 0.404 2.92 0.0962 0.334 -0.352 -0.0124 0.41 0.179 13.2 0.01823 252 -- --
74.06 0.401 2.93 0.0662 0.351 -0.367 0.331 -- 0.169 12.8 0.03057 240 -- --
73.81 0.4 2.92 0.0978 0.333 -0.351 -- 0.404 0.179 13.2 0.01002 251 -- --
74.66 0.402 2.92 0.09 0.339 -0.352 -- -- 0.179 13.3 0.01001 251 -- --
74.52 0.402 2.92 0.0847 -- -0.0871 -- 0.404 0.177 -- 0.0199 270 -- --
74.93 0.406 2.93 0.0405 0.0847 -- -0.405 -- 0.155 2.81 -- -- -- --
75.44 0.407 2.92 0.0499 0.0921 -- -- -- 0.157 4.16 -- -- -- --
75.29 0.404 2.92 0.0593 -- -0.0827 -- -- 0.16 -- 0.0001722 270 -- --
74.86 0.403 2.92 -- 0.342 -0.355 -- -- 0.167 13.3 0.01564 251 -- --
75.9 0.407 2.93 0.0536 -- -- -- -- 0.159 -- -- -- -- --
75.5 0.406 2.93 -- 0.093 -- -- -- 0.151 4.15 -- -- -- --
75.38 0.404 2.92 -- -- -0.083 -- -- 0.16 -- 0.007393 251 -- --
75.97 0.407 2.93 -- -- -- -- -- 0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.75 temperature 25.0 270 > th dose independent rect. 19 8
2 71.76 temperature 25.0 90 > th dose independent rect. 21 8
8 72.00 radiation 1.0 14400 < th dose dependent rect. 23 1
19 72.23 wind 9.0 1440 < th dose independent rect. 23 1
20 72.23 temperature 10.0 1440 > th dose independent rect. 23 1
23 72.23 temperature 30.0 1440 < th dose independent rect. 23 1
27 72.23 humidity 50.0 1440 > th dose independent rect. 23 1
37 72.23 atmosphere 995.0 1440 > th dose independent rect. 23 1
38 72.23 radiation 1.0 1440 < th dose independent rect. 23 1
59 72.23 temperature 10.0 1440 > th dose independent rect. 24 23
62 72.23 atmosphere 995.0 30 > th dose independent rect. 23 23
63 72.23 temperature 25.0 30 > th dose dependent rect. 22 1
64 72.23 radiation 1.0 1440 < th dose dependent rect. 23 1
76 72.24 wind 3.0 30 < th dose independent rect. 22 1
77 72.24 temperature 25.0 30 > th dose independent rect. 22 1
78 72.24 humidity 80.0 30 > th dose independent rect. 22 1
80 72.24 wind 5.0 30 < th dose dependent rect. 22 1
83 72.24 atmosphere 1005.0 30 > th dose dependent rect. 22 1
88 72.25 atmosphere 1005.0 30 > th dose independent rect. 22 1
89 72.25 wind 9.0 30 < th dose independent rect. 23 23
92 72.25 temperature 10.0 30 > th dose dependent rect. 22 1
94 72.25 humidity 50.0 30 > th dose dependent rect. 22 1
98 72.25 atmosphere 995.0 30 > th dose dependent rect. 22 1
100 72.26 wind 1.0 30 > th dose independent rect. 22 1
103 72.26 temperature 10.0 30 > th dose independent rect. 22 1
105 72.26 temperature 30.0 30 < th dose independent rect. 22 1
106 72.26 humidity 50.0 30 > th dose independent rect. 22 1
109 72.26 humidity 90.0 30 < th dose independent rect. 22 1
110 72.26 atmosphere 995.0 30 > th dose independent rect. 22 1
112 72.26 atmosphere 1010.0 30 < th dose independent rect. 22 1
114 72.26 radiation 1.0 30 < th dose independent rect. 22 1
119 72.26 precipitation 0.1 30 < th dose independent rect. 22 1
120 72.26 temperature 10.0 30 > th dose independent rect. 23 23
123 72.26 radiation 1.0 30 < th dose dependent rect. 22 1
128 72.26 precipitation 0.1 30 < th dose dependent rect. 22 1
134 72.28 precipitation 0.1 30 < th dose independent rect. 23 23
135 72.28 atmosphere 1015.0 30 < th dose dependent rect. 22 1
136 72.28 precipitation 0.1 30 < th dose dependent rect. 23 23
141 72.30 temperature 30.0 30 < th dose dependent rect. 22 1
142 72.30 humidity 90.0 30 < th dose dependent rect. 22 1
145 72.31 wind 1.0 30 > th dose dependent rect. 22 1
157 72.34 temperature 25.0 90 > th dose dependent rect. 21 8
197 72.41 temperature 25.0 90 > th dose dependent rect. 21 3
221 72.52 temperature 20.0 10 > th dose dependent rect. 22 7
228 72.54 precipitation 0.1 1440 < th dose independent rect. 23 1
233 72.54 precipitation 0.1 1440 < th dose dependent rect. 23 1
281 72.78 radiation 10.0 10 > th dose independent rect. 6 1
308 72.78 radiation 10.0 10 > th dose dependent rect. 6 1
334 72.79 humidity 50.0 30 > th dose independent rect. 23 23
381 72.93 temperature 10.0 270 > th dose dependent rect. 19 8
413 72.98 temperature 25.0 720 > th dose dependent rect. 4 4
422 73.00 temperature 25.0 720 > th dose independent rect. 4 5
441 73.04 temperature 25.0 90 > th dose independent rect. 5 16
457 73.07 temperature 30.0 30 < th dose independent rect. 23 23
485 73.14 temperature 10.0 90 > th dose dependent rect. 5 16
495 73.17 temperature 25.0 720 < th dose independent rect. 2 7
501 73.17 temperature 10.0 10 > th dose dependent rect. 5 17
512 73.19 atmosphere 1010.0 10 < th dose independent rect. 5 17
513 73.19 temperature 25.0 270 < th dose dependent rect. 7 3
543 73.22 radiation 40.0 10 < th dose dependent rect. 23 23
544 73.23 temperature 30.0 270 < th dose dependent rect. 9 1
563 73.25 temperature 10.0 720 > th dose dependent rect. 5 6
581 73.27 radiation 10.0 30 < th dose independent rect. 23 23
653 73.34 temperature 25.0 10 > th dose dependent rect. 16 19
654 73.35 wind 1.0 10 > th dose independent rect. 23 23
679 73.37 wind 3.0 30 < th dose dependent rect. 6 1
686 73.38 wind 3.0 720 > th dose independent rect. 11 1
690 73.38 atmosphere 1010.0 30 < th dose independent rect. 23 23
692 73.38 atmosphere 1005.0 30 > th dose dependent rect. 6 1
730 73.41 temperature 25.0 720 < th dose independent rect. 19 6
731 73.41 wind 9.0 720 < th dose independent rect. 3 8
764 73.43 radiation 40.0 30 < th dose independent rect. 23 23
769 73.43 temperature 10.0 30 > th dose dependent rect. 3 19
782 73.44 temperature 10.0 30 > th dose dependent rect. 23 23
786 73.45 radiation 1.0 270 > th dose independent rect. 12 21
839 73.48 radiation 30.0 10 < th dose independent rect. 16 19
841 73.48 radiation 1.0 270 < th dose dependent sin 13 NA
859 73.49 atmosphere 995.0 30 > th dose dependent rect. 11 5
880 73.51 temperature 25.0 270 > th dose independent sin 12 NA
901 73.52 radiation 1.0 270 > th dose independent sin 13 NA
902 73.52 radiation 1.0 270 < th dose independent sin 13 NA
917 73.53 temperature 25.0 270 < th dose independent rect. 7 5
926 73.53 atmosphere 995.0 270 > th dose dependent rect. 11 1
940 73.54 temperature 10.0 720 > th dose independent rect. 3 8
941 73.54 atmosphere 995.0 720 > th dose independent rect. 3 8
944 73.54 temperature 10.0 720 > th dose independent rect. 11 16
945 73.54 radiation 10.0 270 > th dose independent rect. 15 17
959 73.54 temperature 25.0 10 > th dose dependent rect. 16 17
982 73.56 humidity 50.0 720 > th dose independent rect. 3 8
983 73.56 precipitation 0.1 720 < th dose independent rect. 3 8
985 73.56 atmosphere 995.0 720 > th dose independent rect. 11 16
998 73.56 precipitation 0.1 720 < th dose dependent rect. 3 8