Os12g0228500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os12g0228500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.83 | 0.533 | 12.3 | -0.208 | 0.262 | 1.5 | -0.51 | -3.75 | -6.05 | 16 | 10.21 | 4402 | 13.2 | 0.95 |
| 132.51 | 0.536 | 12.3 | 0.101 | 0.243 | 1.67 | -0.782 | -- | -5.99 | 15.6 | 10.6 | 4400 | 13.5 | 0.675 |
| 127.96 | 0.527 | 12.3 | -0.217 | 0.32 | 1.59 | -- | -3.7 | -6.08 | 16.4 | 10.6 | 4397 | 13.5 | 0.933 |
| 133.35 | 0.538 | 12.3 | 0.074 | 0.255 | 1.75 | -- | -- | -6.05 | 16.6 | 10.6 | 4403 | 13.3 | 0.978 |
| 132.07 | 0.535 | 12.3 | -0.241 | -- | 1.55 | -- | -3.83 | -6.06 | -- | 10.6 | 4400 | 13.5 | 0.933 |
| 197.77 | 0.659 | 12.2 | 0.131 | 0.519 | -- | -1.13 | -- | -5.4 | 12.8 | -- | -- | -- | -- |
| 203.06 | 0.667 | 12.2 | 0.09 | 0.524 | -- | -- | -- | -5.4 | 13.1 | -- | -- | -- | -- |
| 135.36 | 0.542 | 12.3 | 0.0823 | -- | 1.73 | -- | -- | -6.06 | -- | 10.77 | 4502 | 13.3 | 1.11 |
| 133.45 | 0.538 | 12.3 | -- | 0.249 | 1.75 | -- | -- | -6.06 | 16.7 | 10.6 | 4401 | 13.6 | 0.495 |
| 220.09 | 0.693 | 12.2 | 0.07 | -- | -- | -- | -- | -5.41 | -- | -- | -- | -- | -- |
| 203.27 | 0.667 | 12.2 | -- | 0.522 | -- | -- | -- | -5.41 | 13.1 | -- | -- | -- | -- |
| 135.38 | 0.542 | 12.3 | -- | -- | 1.75 | -- | -- | -6.09 | -- | 10.83 | 4502 | 13.3 | 1.08 |
| 220.22 | 0.693 | 12.2 | -- | -- | -- | -- | -- | -5.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.01 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 154.75 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 4 | 157.25 | wind | 9.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 5 | 157.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 7 | 157.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 11 |
| 9 | 158.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 11 | 158.37 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 21 | 159.66 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 24 | 159.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 34 | 160.27 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 36 | 160.33 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 38 | 160.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 44 | 161.09 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 51 | 161.68 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 55 | 161.86 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 72 | 163.34 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 74 | 163.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 77 | 163.56 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 12 |
| 80 | 163.66 | temperature | 25.0 | 270 | < th | dose independent | sin | 13 | NA |
| 87 | 164.05 | wind | 9.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 94 | 164.51 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 100 | 164.71 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 104 | 164.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 105 | 164.91 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 143 | 166.47 | wind | 3.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 158 | 166.89 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 203 | 168.14 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 5 |
| 206 | 168.20 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 6 | 5 |
| 211 | 168.35 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 11 |
| 216 | 168.41 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 291 | 169.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 299 | 169.72 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 304 | 169.79 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 308 | 169.85 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 310 | 169.88 | temperature | 25.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 311 | 169.89 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 318 | 169.96 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 326 | 170.01 | wind | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 328 | 170.02 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 342 | 170.13 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 354 | 170.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 356 | 170.26 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 361 | 170.28 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 363 | 170.29 | temperature | 25.0 | 30 | > th | dose independent | rect. | 2 | 9 |
| 368 | 170.30 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 370 | 170.31 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 373 | 170.32 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 376 | 170.32 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 380 | 170.32 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 382 | 170.32 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 387 | 170.32 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 389 | 170.32 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 394 | 170.32 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 398 | 170.35 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 403 | 170.38 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 3 |
| 407 | 170.41 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 416 | 170.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 1 |
| 424 | 170.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 436 | 170.82 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 448 | 170.96 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 451 | 171.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 483 | 171.37 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 487 | 171.41 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 10 |
| 499 | 171.54 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 555 | 172.05 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 8 |
| 556 | 172.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 637 | 172.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 638 | 172.41 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 652 | 172.48 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 665 | 172.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 676 | 172.66 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 678 | 172.66 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 680 | 172.67 | temperature | 20.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 708 | 172.88 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 724 | 172.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 733 | 173.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 742 | 173.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 759 | 173.19 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 769 | 173.25 | wind | 9.0 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 771 | 173.28 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 813 | 173.56 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 820 | 173.60 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 832 | 173.69 | temperature | 25.0 | 10 | < th | dose independent | rect. | 18 | 8 |
| 843 | 173.79 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 845 | 173.83 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 859 | 173.95 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 866 | 174.02 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 870 | 174.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 877 | 174.09 | wind | 3.0 | 720 | > th | dose independent | rect. | 2 | 2 |
| 917 | 174.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 921 | 174.31 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 922 | 174.31 | temperature | 30.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 939 | 174.37 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 954 | 174.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 958 | 174.43 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 959 | 174.43 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 983 | 174.55 | wind | 5.0 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 988 | 174.56 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 990 | 174.57 | temperature | 25.0 | 30 | > th | dose independent | sin | 2 | NA |