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Os12g0225300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.64 (0.0128) R2 : 0.0838
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.174 (0.0269) R2dN8 : 0.108 R2N8 : 0.0838
σ : 0.241
deviance : 26.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.91 0.199 8.7 -0.601 0.311 -1.54 0.0583 6.97 -0.167 9.76 1000 267 -- --
18.52 0.202 8.63 -0.163 0.302 -0.289 0.0208 -- -0.168 9.64 1000 123 -- --
17.91 0.197 8.71 -0.607 0.311 -1.53 -- 6.92 -0.167 9.71 1000 245 -- --
18.42 0.201 8.63 -0.164 0.304 -0.291 -- -- -0.167 9.61 1000 245 -- --
23.63 0.228 8.69 -0.457 -- -1.07 -- 4.36 -0.166 -- 1000 224 -- --
20.8 0.214 8.63 -0.112 0.305 -- 0.0386 -- -0.187 9.74 -- -- -- --
20.81 0.214 8.63 -0.111 0.305 -- -- -- -0.187 9.71 -- -- -- --
23.89 0.229 8.63 -0.167 -- -0.294 -- -- -0.166 -- 1000 245 -- --
19.11 0.205 8.62 -- 0.304 -0.264 -- -- -0.151 9.66 1000 245 -- --
26.32 0.24 8.64 -0.114 -- -- -- -- -0.187 -- -- -- -- --
21.13 0.215 8.63 -- 0.305 -- -- -- -0.175 9.74 -- -- -- --
24.6 0.232 8.63 -- -- -0.266 -- -- -0.15 -- 1000 245 -- --
26.66 0.241 8.64 -- -- -- -- -- -0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.39 wind 1 14400 < th dose dependent rect. 2 1
2 17.60 wind 1 14400 < th dose independent rect. 2 1
3 17.65 temperature 25 4320 < th dose independent rect. 1 1
4 17.69 temperature 25 4320 > th dose independent rect. 24 2
5 17.75 wind 1 14400 > th dose independent rect. 2 1
8 17.78 atmosphere 1000 270 > th dose independent rect. 22 23
9 17.79 atmosphere 1000 270 > th dose independent rect. 11 21
11 17.81 temperature 25 4320 < th dose independent rect. 1 3
14 17.82 temperature 25 4320 > th dose dependent rect. 24 1
20 17.89 atmosphere 1000 270 < th dose independent rect. 9 22
23 17.90 temperature 30 1440 > th dose independent rect. 9 5
24 17.90 atmosphere 1000 30 < th dose independent rect. 12 22
27 17.91 temperature 25 4320 < th dose independent rect. 3 1
49 17.92 atmosphere 1000 270 > th dose independent rect. 14 16
52 17.92 atmosphere 1000 10 > th dose independent rect. 12 22
58 17.93 atmosphere 1000 270 > th dose independent no NA NA
63 17.93 atmosphere 1000 270 < th dose independent rect. 3 23
65 17.93 atmosphere 1000 270 < th dose independent rect. 6 23
79 17.96 atmosphere 1000 270 < th dose independent no NA NA
82 17.96 temperature 30 1440 < th dose independent rect. 22 15
102 17.97 atmosphere 1000 270 < th dose independent rect. 20 23
103 17.98 atmosphere 1000 270 > th dose independent sin 16 NA
104 17.98 temperature 30 1440 < th dose independent rect. 5 8
105 17.98 temperature 30 1440 < th dose independent rect. 24 13
111 17.98 atmosphere 1000 270 < th dose independent rect. 15 23
116 17.99 temperature 30 1440 < th dose independent rect. 2 11
119 17.99 atmosphere 1000 10 > th dose independent rect. 14 18
125 18.00 temperature 30 1440 < th dose independent rect. 9 4
163 18.03 atmosphere 1000 30 < th dose independent no NA NA
167 18.03 atmosphere 1000 10 > th dose independent rect. 14 20
172 18.03 atmosphere 1000 30 < th dose independent rect. 5 23
174 18.03 atmosphere 1000 30 < th dose independent rect. 7 23
175 18.03 atmosphere 1000 30 < th dose independent rect. 9 23
178 18.03 atmosphere 1000 30 < th dose independent rect. 17 23
179 18.03 atmosphere 1000 30 < th dose independent rect. 21 23
180 18.03 atmosphere 1000 30 < th dose independent rect. 23 23
190 18.04 atmosphere 1000 30 < th dose independent rect. 1 23
191 18.04 atmosphere 1000 30 < th dose independent rect. 3 23
194 18.04 atmosphere 1000 30 < th dose independent rect. 19 23
196 18.05 atmosphere 1000 10 > th dose independent no NA NA
222 18.07 temperature 30 1440 < th dose independent rect. 10 1
261 18.09 temperature 30 1440 < th dose independent sin 8 NA
276 18.10 temperature 30 1440 > th dose independent sin 8 NA
277 18.10 temperature 30 1440 > th dose independent rect. 10 1
289 18.10 atmosphere 1000 270 < th dose independent rect. 23 23
333 18.14 wind 9 14400 > th dose dependent rect. 22 16
404 18.19 atmosphere 1000 270 < th dose independent sin 14 NA
437 18.20 wind 1 43200 < th dose dependent rect. 9 3
467 18.24 atmosphere 1000 10 > th dose independent sin 11 NA
497 18.25 atmosphere 1000 10 > th dose independent rect. 9 23
524 18.26 atmosphere 1005 10 < th dose dependent rect. 13 23
529 18.27 atmosphere 1000 1440 < th dose independent rect. 17 1
566 18.27 atmosphere 1005 10 < th dose dependent rect. 17 23
582 18.28 atmosphere 1000 10 > th dose independent rect. 24 23
584 18.28 wind 9 14400 > th dose dependent rect. 18 20
585 18.28 atmosphere 1005 10 < th dose dependent rect. 19 23
604 18.29 atmosphere 1005 10 < th dose dependent no NA NA
605 18.29 atmosphere 1005 10 < th dose dependent rect. 1 23
606 18.29 atmosphere 1005 10 < th dose dependent rect. 5 23
607 18.29 atmosphere 1005 10 < th dose dependent rect. 7 23
608 18.29 atmosphere 1005 10 < th dose dependent rect. 9 23
609 18.29 atmosphere 1005 10 < th dose dependent rect. 11 23
610 18.29 atmosphere 1005 10 < th dose dependent rect. 15 23
644 18.30 atmosphere 1005 10 < th dose dependent rect. 21 23
645 18.30 atmosphere 1005 10 < th dose dependent rect. 23 23
648 18.31 atmosphere 1000 1440 > th dose independent rect. 17 1
670 18.31 atmosphere 1005 10 < th dose dependent rect. 3 23
722 18.34 atmosphere 1000 1440 > th dose independent rect. 21 1
746 18.34 temperature 25 4320 > th dose dependent rect. 23 7
747 18.34 wind 1 43200 < th dose dependent rect. 6 20
749 18.35 atmosphere 1000 10 < th dose independent sin 12 NA
771 18.35 wind 3 43200 < th dose dependent rect. 10 1
840 18.39 temperature 10 4320 > th dose dependent rect. 24 1
842 18.39 temperature 30 4320 < th dose dependent rect. 23 2
846 18.40 wind 1 43200 < th dose independent rect. 9 3
875 18.41 atmosphere 1000 1440 < th dose independent rect. 21 1
903 18.41 wind 9 14400 > th dose dependent rect. 13 1
970 18.43 temperature 30 1440 > th dose dependent rect. 10 4