Os12g0225200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PDZ/DHR/GLGF domain containing protein.
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Os12g0225200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PDZ/DHR/GLGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.86 | 0.342 | 11 | -0.79 | 0.93 | -1.59 | -0.885 | 0.161 | -0.748 | 13.3 | 8.198 | 806 | -- | -- |
| 52.85 | 0.339 | 11 | -0.796 | 0.934 | -1.59 | -0.905 | -- | -0.746 | 13.3 | 7.42 | 808 | -- | -- |
| 55.96 | 0.348 | 11 | -0.84 | 0.922 | -1.68 | -- | 0.385 | -0.757 | 13 | 7.32 | 808 | -- | -- |
| 56.16 | 0.349 | 11 | -0.827 | 0.926 | -1.65 | -- | -- | -0.754 | 13.1 | 7.498 | 808 | -- | -- |
| 60.36 | 0.362 | 11 | -0.837 | -- | -1.71 | -- | 0.802 | -0.782 | -- | 4.04 | 527 | -- | -- |
| 63.07 | 0.372 | 11 | -0.765 | 1.64 | -- | -0.836 | -- | -0.674 | 16.1 | -- | -- | -- | -- |
| 65.03 | 0.378 | 11 | -0.775 | 1.63 | -- | -- | -- | -0.679 | 16.2 | -- | -- | -- | -- |
| 62.44 | 0.368 | 11 | -0.854 | -- | -1.69 | -- | -- | -0.77 | -- | 3.787 | 532 | -- | -- |
| 73.14 | 0.398 | 11 | -- | 0.933 | -1.53 | -- | -- | -0.669 | 13.5 | 10 | 806 | -- | -- |
| 209.68 | 0.677 | 11 | -0.84 | -- | -- | -- | -- | -0.723 | -- | -- | -- | -- | -- |
| 80.84 | 0.421 | 11 | -- | 1.65 | -- | -- | -- | -0.593 | 16.2 | -- | -- | -- | -- |
| 80.57 | 0.418 | 11 | -- | -- | -1.69 | -- | -- | -0.678 | -- | 8.226 | 527 | -- | -- |
| 228.31 | 0.705 | 11 | -- | -- | -- | -- | -- | -0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.30 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 3 | 51.78 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 7 | 52.22 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 11 | 52.35 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 22 | 52.99 | radiation | 10.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 23 | 53.00 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 25 | 53.03 | temperature | 25.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 29 | 53.08 | radiation | 1.0 | 720 | > th | dose independent | sin | 14 | NA |
| 30 | 53.11 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 31 | 53.11 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 40 | 53.22 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 51 | 53.26 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 64 | 53.39 | radiation | 10.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 70 | 53.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 71 | 53.43 | radiation | 1.0 | 720 | < th | dose independent | sin | 16 | NA |
| 72 | 53.43 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 20 | 11 |
| 76 | 53.48 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 81 | 53.58 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 87 | 53.61 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 19 |
| 91 | 53.61 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 94 | 53.64 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 21 |
| 96 | 53.65 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 98 | 53.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 99 | 53.67 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 103 | 53.70 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 104 | 53.70 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 113 | 53.77 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 120 | 53.82 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 121 | 53.83 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 142 | 53.88 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 143 | 53.89 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 150 | 53.92 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 152 | 53.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 154 | 53.94 | radiation | 1.0 | 720 | < th | dose independent | sin | 14 | NA |
| 168 | 53.99 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 191 | 54.03 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 192 | 54.04 | temperature | 25.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 214 | 54.06 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 223 | 54.10 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 226 | 54.10 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 228 | 54.11 | radiation | 1.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 248 | 54.16 | temperature | 25.0 | 90 | < th | dose independent | sin | 10 | NA |
| 250 | 54.16 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 258 | 54.19 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 264 | 54.20 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 270 | 54.21 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 21 |
| 290 | 54.25 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 297 | 54.27 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 335 | 54.33 | radiation | 1.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 337 | 54.33 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 343 | 54.35 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 359 | 54.35 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 362 | 54.36 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 374 | 54.40 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 400 | 54.42 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 411 | 54.44 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 414 | 54.45 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 415 | 54.45 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 424 | 54.48 | radiation | 1.0 | 720 | > th | dose independent | rect. | 6 | 23 |
| 429 | 54.49 | radiation | 1.0 | 720 | > th | dose independent | rect. | 6 | 13 |
| 456 | 54.51 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 457 | 54.51 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 498 | 54.57 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 22 |
| 513 | 54.59 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 539 | 54.62 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 11 |
| 543 | 54.62 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 546 | 54.62 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 548 | 54.63 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 13 |
| 570 | 54.67 | radiation | 10.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 574 | 54.67 | radiation | 10.0 | 720 | < th | dose dependent | no | NA | NA |
| 581 | 54.68 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 591 | 54.70 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 619 | 54.72 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 628 | 54.73 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 9 |
| 685 | 54.78 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 708 | 54.81 | wind | 7.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 713 | 54.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 717 | 54.81 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 722 | 54.81 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 723 | 54.81 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 724 | 54.81 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 733 | 54.81 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 740 | 54.82 | radiation | 1.0 | 720 | < th | dose independent | sin | 0 | NA |
| 745 | 54.82 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 758 | 54.83 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 776 | 54.84 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 778 | 54.85 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 19 |
| 787 | 54.86 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 795 | 54.87 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 4 |
| 821 | 54.89 | wind | 5.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 860 | 54.93 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 10 |
| 914 | 54.98 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 20 | 11 |
| 916 | 54.98 | humidity | 60.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 917 | 54.98 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 921 | 54.99 | humidity | 90.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 927 | 55.00 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 10 |
| 928 | 55.00 | humidity | 90.0 | 720 | < th | dose independent | rect. | 13 | 13 |
| 929 | 55.00 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 930 | 55.00 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 934 | 55.00 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 947 | 55.01 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 972 | 55.03 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 19 |
| 989 | 55.05 | temperature | 25.0 | 270 | > th | dose independent | sin | 11 | NA |
| 1000 | 55.06 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 4 |