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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0222900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.079) R2 : 0.752
β1 : 4.01 (0.484) R2dD : 0.217 R2D : -0.794
β2 : 1.73 (0.146) R2dC : 0.0782 R2C : -0.292
β3 : -4.8 (0.249) R2dE : 0.383 R2E : -0.223
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15 (1.72) R2dD*E : 0.238 R2D*E : -0.517
γ1 : 4.36 (0.156) R2dN8 : 0.978 R2N8 : 0.381
σ : 1.04
deviance : 501.12
__
_____
C
peak time of C : 17.6
E
wheather : temperature
threshold : 24.49
memory length : 4313
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
500.9 1.05 5.02 3.93 1.74 -4.8 -0.46 14.9 4.32 17.5 24.59 4297 -- --
539.54 1.08 5.09 2.93 1.83 -5.11 -0.805 -- 5.29 17.2 8.411 17638 -- --
501.12 1.04 5.01 4.01 1.73 -4.8 -- 15 4.36 17.6 24.49 4313 -- --
540.3 1.08 5.09 2.7 1.86 -4.89 -- -- 5.27 17.5 16.05 17836 -- --
650.71 1.19 5.03 3.3 -- -4.48 -- 10.9 4.44 -- 23.2 4233 -- --
923.95 1.43 5.54 -0.951 1.87 -- -0.651 -- 3.26 17 -- -- -- --
925 1.42 5.55 -0.952 1.87 -- -- -- 3.26 17.1 -- -- -- --
705.43 1.24 5.07 2.8 -- -4.97 -- -- 5.23 -- 16.17 18523 -- --
557.79 1.1 5.26 -- 1.62 -3.05 -- -- 4.49 17.1 21.91 8535 -- --
1108.07 1.56 5.53 -1.02 -- -- -- -- 3.21 -- -- -- -- --
948.9 1.44 5.52 -- 1.88 -- -- -- 3.36 17 -- -- -- --
703.75 1.24 5.26 -- -- -3.22 -- -- 4.4 -- 21.78 8454 -- --
1135.48 1.57 5.5 -- -- -- -- -- 3.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 492.67 humidity 90 43200 < th dose independent rect. 9 19
3 493.08 temperature 25 4320 > th dose independent rect. 17 20
4 493.89 humidity 90 43200 < th dose independent rect. 12 15
6 493.96 humidity 90 43200 > th dose independent rect. 8 21
7 494.09 humidity 90 43200 > th dose independent rect. 9 19
12 494.22 temperature 25 4320 > th dose independent rect. 21 16
23 495.05 temperature 25 4320 < th dose independent rect. 17 20
30 495.53 temperature 25 4320 < th dose independent rect. 17 2
31 495.54 humidity 90 43200 < th dose independent sin 16 NA
35 495.58 temperature 25 4320 > th dose independent rect. 17 2
36 495.59 humidity 90 43200 > th dose independent sin 17 NA
49 496.64 temperature 25 4320 < th dose independent rect. 21 16
56 497.13 humidity 90 43200 < th dose independent rect. 15 12
65 497.63 humidity 90 43200 > th dose independent rect. 12 23
103 499.00 humidity 90 43200 > th dose independent rect. 21 23
109 499.10 humidity 90 43200 > th dose independent rect. 23 23
121 499.31 humidity 90 43200 > th dose independent no NA NA
130 499.61 humidity 90 43200 < th dose independent rect. 18 1
133 499.67 humidity 90 43200 > th dose independent rect. 16 23
144 500.03 temperature 25 4320 < th dose independent rect. 6 5
146 500.06 temperature 25 4320 < th dose independent rect. 5 7
159 500.31 humidity 90 43200 < th dose independent rect. 10 1
161 500.33 humidity 90 43200 > th dose dependent sin 17 NA
167 500.45 temperature 25 4320 > th dose independent rect. 5 7
169 500.49 temperature 25 4320 > th dose dependent rect. 13 21
181 500.72 temperature 25 4320 > th dose dependent rect. 16 2
196 501.02 temperature 25 4320 > th dose dependent rect. 13 13
208 501.25 temperature 25 4320 > th dose independent rect. 6 5
224 501.39 humidity 90 43200 > th dose dependent rect. 13 13
232 501.54 humidity 90 43200 > th dose dependent rect. 14 11
243 501.69 humidity 90 43200 > th dose dependent rect. 11 16
247 501.76 temperature 25 4320 > th dose dependent sin 17 NA
248 501.76 temperature 25 4320 > th dose dependent rect. 8 19
283 502.09 temperature 25 4320 > th dose independent sin 6 NA
297 502.18 temperature 25 4320 > th dose dependent rect. 21 22
330 502.53 temperature 25 4320 > th dose dependent rect. 15 4
336 502.59 temperature 25 4320 > th dose independent rect. 1 11
341 502.64 humidity 90 43200 < th dose independent rect. 12 23
354 502.73 temperature 25 4320 > th dose dependent no NA NA
382 502.91 humidity 90 43200 > th dose dependent rect. 7 22
412 503.19 humidity 90 43200 < th dose independent rect. 21 23
422 503.26 temperature 25 4320 > th dose dependent rect. 13 6
450 503.42 humidity 90 43200 < th dose independent rect. 24 23
459 503.48 humidity 90 43200 < th dose independent rect. 16 23
460 503.48 humidity 90 43200 > th dose dependent rect. 2 23
491 503.74 temperature 25 4320 < th dose independent sin 6 NA
504 503.84 humidity 90 43200 > th dose dependent rect. 20 23
506 503.86 humidity 90 43200 > th dose independent rect. 10 1
524 503.98 humidity 90 43200 > th dose dependent rect. 24 23
525 503.99 humidity 90 43200 > th dose dependent no NA NA
538 504.09 humidity 90 43200 < th dose independent no NA NA
542 504.09 humidity 90 43200 > th dose dependent rect. 4 23
570 504.35 humidity 90 43200 < th dose independent rect. 24 20
645 504.91 temperature 25 4320 > th dose independent rect. 21 22
648 504.93 humidity 90 43200 > th dose independent rect. 18 1
746 505.68 humidity 90 43200 > th dose dependent rect. 24 19
775 506.12 temperature 25 4320 > th dose independent rect. 4 22
777 506.12 humidity 90 43200 < th dose independent rect. 2 23
813 506.55 temperature 25 4320 > th dose independent no NA NA
841 506.83 temperature 25 4320 > th dose independent rect. 1 23
895 507.50 temperature 25 4320 < th dose independent rect. 21 23
929 507.97 humidity 90 43200 > th dose dependent rect. 21 2
962 508.48 humidity 90 43200 > th dose independent rect. 21 1
971 508.58 temperature 25 4320 < th dose independent rect. 4 22
972 508.65 humidity 90 43200 > th dose dependent rect. 20 4