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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0222800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.05 (0.065) R2 : 0.718
β1 : 2.51 (0.244) R2dD : 0.0776 R2D : 0.133
β2 : 2.18 (0.162) R2dC : 0.116 R2C : 0.0739
β3 : -1.86 (0.262) R2dE : 0.0352 R2E : 0.00273
β4 : 3.25 (0.715) R2dD*C : 0.0133 R2D*C : -0.041
β5 : -8.83 (1) R2dD*E : 0.0565 R2D*E : 0.0315
γ1 : -2.74 (0.134) R2dN8 : 0.351 R2N8 : 0.37
σ : 1.18
deviance : 627.91
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_____
C
peak time of C : 16.2
E
wheather : radiation
threshold : 1.776
memory length : 1566
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 2.28

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
627.91 1.18 6.05 2.51 2.18 -1.86 3.25 -8.83 -2.74 16.2 1.776 1566 17 2.28
713.94 1.24 6.2 2.75 2.03 -1.57 2.36 -- -2.86 16.4 -0.004934 9579 16.5 2.05
656.33 1.19 6.06 2.6 2.16 -1.95 -- -8.31 -2.77 16.3 2.071 1569 17 2.31
723.77 1.25 6.14 2.75 2.12 -1.75 -- -- -2.73 16.2 -0.9226 7356 16.5 2.95
761.35 1.29 6.06 2.25 -- -3.18 -- -7.3 -2.73 -- -3.41 2394 16.9 3.32
792.25 1.32 6.2 3.4 2.19 -- 2.91 -- -2.83 16 -- -- -- --
816.36 1.34 6.2 3.44 2.21 -- -- -- -2.82 16.1 -- -- -- --
826.54 1.34 6.14 2.9 -- -3.33 -- -- -2.67 -- -3.538 2377 16.8 4.75
780.47 1.3 6.11 -- 2.08 -2.94 -- -- -2.54 16.2 -1.429 18694 17.4 3.38
1081.06 1.54 6.19 3.35 -- -- -- -- -2.88 -- -- -- -- --
1128.08 1.57 6.28 -- 2.14 -- -- -- -3.2 16.2 -- -- -- --
888.1 1.39 6.15 -- -- -3.52 -- -- -2.79 -- -5.659 18143 17.6 4.42
1377.06 1.73 6.27 -- -- -- -- -- -3.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 632.24 radiation 10 1440 < th dose independent rect. 16 12
5 632.77 radiation 10 1440 < th dose independent rect. 16 3
10 633.07 radiation 10 1440 < th dose independent rect. 16 7
13 633.77 humidity 60 14400 < th dose independent rect. 17 2
15 635.58 humidity 60 14400 < th dose independent rect. 17 15
17 636.11 humidity 60 14400 < th dose independent rect. 17 5
28 638.13 radiation 1 1440 > th dose dependent rect. 17 2
41 641.06 humidity 60 14400 > th dose independent rect. 17 2
42 641.58 temperature 30 270 < th dose dependent rect. 6 18
43 641.78 humidity 60 14400 < th dose dependent rect. 17 1
44 641.91 humidity 60 14400 > th dose independent rect. 17 11
48 642.10 temperature 30 270 < th dose dependent rect. 5 20
49 642.14 humidity 60 14400 > th dose independent rect. 17 15
51 642.35 radiation 40 1440 < th dose dependent rect. 17 11
52 642.51 humidity 60 14400 > th dose independent rect. 17 6
65 643.13 radiation 10 1440 > th dose dependent rect. 16 14
78 643.17 radiation 10 1440 > th dose independent rect. 16 14
80 643.40 radiation 10 1440 > th dose independent rect. 16 2
92 643.57 temperature 25 1440 > th dose dependent rect. 17 2
105 644.93 radiation 20 1440 < th dose dependent rect. 17 2
107 644.93 temperature 30 90 < th dose dependent rect. 8 19
126 646.27 radiation 20 1440 < th dose dependent rect. 17 6
147 647.30 temperature 10 1440 > th dose dependent rect. 17 2
189 649.96 humidity 60 14400 < th dose dependent rect. 17 15
197 650.30 humidity 60 14400 < th dose dependent rect. 17 5
214 650.52 temperature 10 270 > th dose dependent rect. 24 21
261 652.58 temperature 30 30 < th dose dependent rect. 6 21
263 652.69 temperature 25 720 > th dose dependent rect. 17 19
270 652.89 radiation 20 1440 > th dose dependent rect. 15 17
300 653.42 temperature 30 1440 > th dose dependent rect. 18 15
309 653.67 humidity 80 1440 < th dose dependent rect. 18 1
355 654.68 radiation 20 1440 < th dose independent rect. 15 17
371 655.46 temperature 30 1440 < th dose independent sin 13 NA
376 655.64 temperature 30 1440 < th dose independent rect. 15 13
379 655.67 temperature 30 1440 < th dose independent rect. 15 11
388 655.83 temperature 30 1440 > th dose independent sin 13 NA
393 655.86 temperature 30 1440 < th dose independent rect. 15 17
399 655.96 temperature 30 1440 < th dose independent rect. 15 4
416 656.01 humidity 80 1440 < th dose dependent rect. 17 3
421 656.06 temperature 30 1440 > th dose independent rect. 15 4
442 656.09 temperature 25 1440 > th dose dependent rect. 15 19
494 656.50 temperature 30 1440 < th dose independent rect. 14 20
495 656.52 temperature 30 1440 < th dose dependent rect. 18 1
500 656.54 temperature 30 1440 < th dose dependent rect. 18 4
513 656.75 temperature 30 1440 > th dose dependent sin 11 NA
556 657.37 temperature 30 1440 > th dose independent rect. 14 20
647 658.25 temperature 30 1440 > th dose independent rect. 17 2
717 658.73 radiation 10 14400 > th dose dependent rect. 17 1
744 658.96 temperature 30 1440 < th dose independent rect. 17 10
789 659.18 temperature 30 1440 < th dose independent rect. 17 3
790 659.19 temperature 30 1440 < th dose independent rect. 17 8
797 659.23 temperature 10 90 > th dose dependent rect. 3 18
830 659.58 radiation 20 1440 > th dose independent rect. 15 17
924 660.03 temperature 30 90 < th dose dependent rect. 11 16
971 660.56 temperature 25 1440 > th dose dependent rect. 7 16
981 660.69 temperature 30 1440 < th dose independent rect. 17 17