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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0221600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0531) R2 : 0.849
β1 : 1.93 (0.205) R2dD : 0.0345 R2D : -0.135
β2 : 1.92 (0.167) R2dC : 0.0802 R2C : -0.236
β3 : -2.74 (0.336) R2dE : 0.0431 R2E : -0.314
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.23 (0.116) R2dN8 : 0.977 R2N8 : 0.746
σ : 0.978
deviance : 440.5
__
_____
C
peak time of C : 23.9
E
wheather : radiation
threshold : 2.556e-07
memory length : 1677
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
432.41 0.977 11.8 1.59 1.51 -1.5 -1.6 4.7 -5.23 23.1 3.733e-05 1650 -- --
440.69 0.978 11.8 1.91 1.95 -2.75 -0.132 -- -5.22 23.9 0.05005 1681 -- --
440.06 0.977 11.8 1.7 1.45 -1.69 -- 3.12 -5.23 23 0.05162 1595 -- --
440.5 0.978 11.8 1.93 1.92 -2.74 -- -- -5.23 23.9 2.556e-07 1677 -- --
457.53 0.996 11.8 1.58 -- -2.25 -- 3.33 -5.23 -- 0.1033 2546 -- --
487.37 1.03 11.7 2.53 1.13 -- -0.329 -- -4.92 22.1 -- -- -- --
487.78 1.03 11.7 2.54 1.13 -- -- -- -4.92 22.1 -- -- -- --
456.7 0.995 11.7 1.98 -- -2.45 -- -- -5.15 -- 0.06 2567 -- --
522.49 1.06 11.8 -- 2.44 -4.14 -- -- -5.47 0.406 0.004652 1682 -- --
564.5 1.11 11.7 2.56 -- -- -- -- -4.92 -- -- -- -- --
658.39 1.2 11.8 -- 1.14 -- -- -- -5.21 22.3 -- -- -- --
549.71 1.09 11.7 -- -- -3.25 -- -- -5.27 -- 2.739e-08 2678 -- --
737.29 1.27 11.7 -- -- -- -- -- -5.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 427.51 wind 9 14400 < th dose independent rect. 13 1
2 429.25 wind 9 14400 > th dose dependent rect. 13 2
3 429.42 wind 9 14400 > th dose independent rect. 13 1
6 433.72 wind 9 14400 > th dose dependent rect. 22 17
8 434.18 wind 3 43200 < th dose dependent rect. 20 1
9 434.41 wind 1 43200 < th dose dependent rect. 13 13
12 434.99 wind 1 43200 > th dose independent rect. 21 1
13 435.03 wind 1 43200 < th dose dependent rect. 15 11
15 435.15 wind 1 43200 < th dose independent rect. 16 10
17 435.22 wind 1 43200 < th dose independent rect. 19 3
22 436.24 wind 1 43200 < th dose dependent sin 17 NA
24 436.35 wind 1 43200 > th dose independent rect. 19 3
28 437.05 wind 9 14400 > th dose dependent rect. 10 5
30 437.07 temperature 20 720 > th dose dependent sin 6 NA
31 437.09 wind 9 14400 > th dose dependent rect. 5 10
35 437.14 wind 9 14400 > th dose dependent rect. 3 12
39 437.26 humidity 90 14400 < th dose dependent rect. 3 1
51 437.74 wind 1 43200 > th dose independent rect. 17 9
57 438.29 temperature 20 720 > th dose dependent rect. 21 18
59 438.35 wind 1 43200 > th dose independent rect. 19 7
60 438.44 temperature 25 720 > th dose independent sin 6 NA
62 438.52 radiation 1 1440 < th dose dependent sin 14 NA
65 438.56 wind 1 43200 < th dose independent rect. 19 7
66 438.58 wind 1 43200 > th dose independent rect. 9 3
68 438.63 humidity 80 14400 > th dose independent rect. 3 1
70 438.72 temperature 20 720 > th dose dependent rect. 4 5
73 438.78 wind 1 43200 > th dose independent rect. 10 1
86 439.34 radiation 1 1440 < th dose dependent rect. 13 17
90 439.44 radiation 1 720 < th dose dependent rect. 4 17
91 439.45 temperature 20 720 > th dose dependent rect. 23 12
100 439.76 wind 9 14400 > th dose independent rect. 22 17
109 439.91 radiation 1 1440 < th dose dependent rect. 10 20
120 440.14 humidity 80 43200 > th dose independent rect. 20 1
126 440.25 wind 3 14400 > th dose independent rect. 12 1
127 440.25 wind 1 43200 < th dose independent rect. 10 1
137 440.47 wind 1 43200 > th dose independent rect. 23 2
140 440.49 radiation 1 1440 < th dose dependent rect. 16 9
143 440.53 radiation 1 1440 < th dose dependent rect. 16 3
149 440.58 temperature 25 720 > th dose independent rect. 23 12
151 440.60 radiation 1 1440 < th dose dependent rect. 16 6
157 440.63 temperature 25 720 > th dose independent rect. 2 8
160 440.66 atmosphere 1005 43200 < th dose independent rect. 10 1
183 441.09 radiation 10 14400 > th dose dependent rect. 6 1
218 441.34 wind 9 14400 > th dose independent rect. 3 12
222 441.35 humidity 70 43200 > th dose independent rect. 9 1
227 441.40 wind 1 43200 > th dose independent rect. 14 12
231 441.44 temperature 20 10 > th dose dependent rect. 23 21
241 441.58 wind 9 14400 < th dose independent rect. 22 17
247 441.66 wind 1 14400 > th dose dependent rect. 11 3
249 441.68 wind 9 14400 > th dose independent rect. 5 10
257 441.75 radiation 1 1440 < th dose dependent rect. 16 23
271 441.89 radiation 1 1440 < th dose dependent rect. 21 22
272 441.90 radiation 1 1440 < th dose dependent rect. 23 20
273 441.90 radiation 1 1440 < th dose dependent rect. 3 21
285 441.92 radiation 1 1440 < th dose dependent no NA NA
293 441.92 radiation 1 1440 < th dose dependent rect. 23 23
327 441.97 wind 3 43200 > th dose dependent rect. 16 1
335 442.01 humidity 80 14400 < th dose dependent rect. 22 1
346 442.04 wind 3 14400 > th dose dependent rect. 11 5
361 442.15 wind 9 14400 < th dose dependent rect. 11 3
369 442.22 humidity 80 14400 < th dose independent rect. 23 1
378 442.27 humidity 90 43200 < th dose dependent rect. 10 1
380 442.29 wind 9 14400 > th dose independent rect. 9 6
384 442.32 humidity 80 14400 < th dose independent rect. 3 1
389 442.37 humidity 80 43200 > th dose independent rect. 19 3
395 442.43 humidity 70 43200 < th dose independent rect. 9 2
406 442.51 wind 1 43200 < th dose dependent rect. 10 1
419 442.60 wind 1 43200 < th dose independent rect. 23 2
420 442.62 wind 9 14400 > th dose dependent rect. 19 20
421 442.64 temperature 10 30 > th dose dependent rect. 23 23
458 443.02 humidity 70 43200 < th dose dependent rect. 13 1
462 443.05 wind 9 14400 < th dose independent rect. 2 13
475 443.16 humidity 70 43200 < th dose dependent rect. 12 3
485 443.23 temperature 20 10 > th dose dependent rect. 23 23
500 443.31 wind 3 14400 < th dose independent rect. 12 1
501 443.32 wind 5 14400 < th dose dependent rect. 11 2
515 443.35 radiation 1 1440 < th dose dependent rect. 10 15
516 443.36 radiation 1 1440 < th dose dependent rect. 10 9
522 443.38 humidity 70 43200 < th dose dependent rect. 10 5
529 443.39 radiation 1 1440 < th dose dependent rect. 10 12
536 443.42 humidity 70 43200 < th dose independent rect. 8 7
545 443.48 humidity 60 43200 > th dose independent rect. 12 1
587 443.63 wind 1 43200 < th dose dependent rect. 6 1
595 443.67 humidity 70 43200 < th dose independent rect. 3 14
598 443.69 humidity 70 43200 < th dose independent rect. 4 12
661 443.84 atmosphere 1005 43200 > th dose independent rect. 10 1
668 443.87 humidity 70 43200 > th dose independent rect. 8 6
673 443.88 humidity 80 14400 < th dose dependent rect. 21 7
681 443.93 humidity 70 43200 < th dose independent sin 1 NA
696 443.98 radiation 1 720 < th dose dependent sin 2 NA
701 443.99 humidity 50 43200 > th dose dependent rect. 10 1
704 444.00 temperature 20 90 > th dose dependent sin 3 NA
706 444.00 humidity 80 14400 < th dose dependent rect. 20 9
714 444.04 humidity 80 43200 < th dose dependent rect. 18 1
767 444.21 humidity 50 43200 > th dose dependent rect. 8 3
773 444.24 humidity 70 43200 < th dose independent rect. 8 14
816 444.35 radiation 20 43200 > th dose independent rect. 9 2
823 444.37 humidity 70 43200 < th dose dependent rect. 5 11
828 444.39 wind 9 14400 < th dose independent rect. 8 7
852 444.43 wind 9 14400 > th dose independent rect. 19 21
855 444.44 humidity 60 43200 > th dose independent rect. 24 15
859 444.44 humidity 80 43200 < th dose dependent rect. 8 12
862 444.45 humidity 70 43200 > th dose independent rect. 3 16
888 444.52 humidity 70 43200 > th dose independent sin 1 NA
894 444.53 humidity 70 43200 > th dose independent rect. 5 10
905 444.55 wind 9 43200 < th dose dependent rect. 16 1
916 444.57 humidity 70 43200 > th dose independent rect. 8 13
926 444.59 humidity 70 43200 < th dose dependent sin 23 NA
996 444.70 humidity 60 43200 > th dose independent rect. 19 20
999 444.71 humidity 60 43200 < th dose independent rect. 12 1