Os12g0221400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0221400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.61 | 0.872 | 7.23 | -3.32 | 0.598 | -5.24 | -1.66 | 29.4 | 1.37 | 4 | 29.77 | 4068 | -- | -- |
| 378.75 | 0.906 | 7.01 | -2.57 | 0.723 | -4.39 | -1.46 | -- | 0.102 | 3.06 | 18.9 | 47520 | -- | -- |
| 350.34 | 0.872 | 7.23 | -3.31 | 0.577 | -5.27 | -- | 29.7 | 1.36 | 3.32 | 29.72 | 3988 | -- | -- |
| 377.85 | 0.905 | 6.99 | -2.07 | 0.652 | -4.19 | -- | -- | 0.175 | 2.32 | 19 | 45652 | -- | -- |
| 368.87 | 0.895 | 7.23 | -3.32 | -- | -5.38 | -- | 29.9 | 1.38 | -- | 29.72 | 3950 | -- | -- |
| 517.93 | 1.07 | 6.64 | 2.51 | 0.72 | -- | -1.08 | -- | 1.74 | 2.72 | -- | -- | -- | -- |
| 521.35 | 1.07 | 6.64 | 2.54 | 0.715 | -- | -- | -- | 1.75 | 2.15 | -- | -- | -- | -- |
| 401.55 | 0.933 | 6.99 | -2 | -- | -4.12 | -- | -- | 0.184 | -- | 19.03 | 45708 | -- | -- |
| 374.1 | 0.901 | 6.9 | -- | 0.567 | -3.04 | -- | -- | 0.623 | 1.98 | 20.37 | 18073 | -- | -- |
| 551.9 | 1.1 | 6.63 | 2.57 | -- | -- | -- | -- | 1.77 | -- | -- | -- | -- | -- |
| 691.24 | 1.23 | 6.7 | -- | 0.763 | -- | -- | -- | 1.47 | 2.22 | -- | -- | -- | -- |
| 394.15 | 0.925 | 6.89 | -- | -- | -3.04 | -- | -- | 0.631 | -- | 21.2 | 10800 | -- | -- |
| 725.97 | 1.26 | 6.69 | -- | -- | -- | -- | -- | 1.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 352.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 12 | 352.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 16 | 352.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 20 | 353.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 25 | 354.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 35 | 355.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 49 | 355.50 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 50 | 355.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 64 | 356.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 66 | 356.82 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 84 | 357.72 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 117 | 359.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 139 | 359.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 162 | 360.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 199 | 360.74 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 205 | 360.76 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 213 | 360.80 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 214 | 360.83 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 217 | 360.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 247 | 361.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 261 | 361.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 263 | 361.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 277 | 361.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 278 | 361.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 282 | 361.71 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 289 | 361.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 318 | 362.23 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 328 | 362.32 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 362 | 362.77 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 372 | 363.06 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 383 | 363.26 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 388 | 363.39 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 410 | 363.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 412 | 363.77 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 447 | 364.80 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 454 | 364.98 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 469 | 365.28 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 482 | 365.48 | temperature | 20 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 484 | 365.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 486 | 365.54 | temperature | 20 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 490 | 365.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 492 | 365.63 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 500 | 365.66 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 514 | 365.80 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 518 | 365.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 522 | 365.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 526 | 365.86 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 533 | 365.89 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 535 | 365.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 555 | 365.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 568 | 366.05 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 585 | 366.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 610 | 366.27 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 626 | 366.34 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 754 | 366.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 785 | 366.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 823 | 367.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 832 | 367.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 848 | 367.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 921 | 367.28 | temperature | 25 | 14400 | > th | dose independent | sin | 3 | NA |
| 994 | 367.45 | temperature | 25 | 14400 | < th | dose independent | sin | 3 | NA |