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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0218900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.39 (0.0662) R2 : 0.672
β1 : 4.9 (0.248) R2dD : 0.3 R2D : 0.229
β2 : 1.95 (0.173) R2dC : 0.0975 R2C : 0.0677
β3 : -2.23 (0.18) R2dE : 0.121 R2E : -0.0465
β4 : 2.69 (0.782) R2dD*C : 0.00947 R2D*C : -0.0458
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.13 (0.142) R2dN8 : 0.217 R2N8 : 0.216
σ : 1.24
deviance : 705
__
_____
C
peak time of C : 17.1
E
wheather : temperature
threshold : 28.31
memory length : 1299
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
701.11 1.24 6.55 3.46 1.98 -1.46 2.76 -6.75 -2.29 17.1 28.5 1274 -- --
705 1.24 6.39 4.9 1.95 -2.23 2.69 -- -2.13 17.1 28.31 1299 -- --
719.8 1.25 6.56 3.36 2 -1.48 -- -7.13 -2.29 17.3 28.31 1274 -- --
724.43 1.25 6.38 4.86 2.01 -2.26 -- -- -2.09 17.3 28.3 1293 -- --
925.27 1.42 6.58 2.91 -- -1.45 -- -9.19 -2.39 -- 28.23 1275 -- --
934.35 1.43 6.34 4.18 2.19 -- 3.5 -- -1.92 16.6 -- -- -- --
966.17 1.46 6.33 4.2 2.23 -- -- -- -1.9 16.8 -- -- -- --
931.81 1.42 6.31 4.94 -- -2.57 -- -- -1.96 -- 27 1293 -- --
1305.92 1.68 6.5 -- 2.02 -1.61 -- -- -2.66 17 32.86 1087 -- --
1228.24 1.64 6.31 4.12 -- -- -- -- -1.96 -- -- -- -- --
1432.14 1.77 6.43 -- 2.15 -- -- -- -2.37 16.8 -- -- -- --
1516.62 1.81 6.49 -- -- -1.77 -- -- -2.77 -- 32.17 1154 -- --
1676.26 1.91 6.41 -- -- -- -- -- -2.42 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 683.98 radiation 10 1440 < th dose independent rect. 16 12
2 684.06 radiation 10 1440 < th dose independent rect. 16 10
5 684.59 radiation 10 1440 < th dose independent rect. 16 3
13 687.71 radiation 10 1440 < th dose independent rect. 16 15
15 692.59 humidity 60 14400 < th dose independent rect. 17 1
16 692.68 radiation 20 1440 > th dose dependent rect. 15 17
17 693.02 radiation 10 1440 > th dose dependent rect. 16 15
18 693.03 radiation 10 1440 > th dose independent rect. 16 14
19 693.11 radiation 10 1440 > th dose independent rect. 16 2
31 693.26 radiation 1 1440 > th dose dependent rect. 17 2
42 693.74 temperature 25 1440 > th dose dependent rect. 17 2
81 697.97 radiation 20 1440 < th dose independent rect. 15 17
83 699.00 radiation 40 1440 < th dose dependent rect. 17 11
87 699.49 radiation 40 1440 < th dose dependent rect. 17 9
92 699.84 humidity 80 1440 < th dose dependent rect. 18 1
107 701.93 radiation 20 1440 < th dose dependent rect. 17 2
121 703.44 humidity 60 14400 < th dose independent rect. 17 15
139 704.15 humidity 60 14400 > th dose independent rect. 17 2
140 704.24 humidity 60 14400 < th dose independent rect. 17 5
162 705.66 temperature 30 1440 > th dose dependent rect. 17 18
163 705.78 radiation 20 1440 > th dose independent rect. 15 17
177 707.15 temperature 30 1440 > th dose dependent sin 11 NA
181 707.35 humidity 70 1440 > th dose independent rect. 17 11
182 707.38 humidity 70 1440 > th dose independent rect. 17 9
188 707.66 temperature 30 1440 < th dose independent rect. 14 20
194 707.90 humidity 70 1440 > th dose independent rect. 17 3
205 708.21 humidity 60 14400 < th dose dependent rect. 17 1
208 708.26 temperature 30 1440 > th dose independent rect. 14 20
218 709.28 humidity 60 14400 > th dose independent rect. 17 11
221 709.34 humidity 60 14400 > th dose independent rect. 17 9
222 709.36 humidity 60 14400 > th dose independent rect. 17 15
226 709.52 temperature 30 1440 > th dose independent sin 12 NA
234 709.89 temperature 30 1440 < th dose independent rect. 14 14
235 709.92 temperature 30 1440 > th dose independent rect. 14 5
250 709.98 temperature 30 1440 < th dose independent rect. 14 12
259 710.09 temperature 30 1440 < th dose independent sin 12 NA
271 710.26 temperature 30 1440 < th dose independent rect. 14 5
291 710.65 radiation 30 1440 < th dose dependent rect. 16 15
394 711.74 temperature 30 1440 > th dose independent rect. 17 18
414 711.84 temperature 30 1440 < th dose independent rect. 17 17
416 711.92 temperature 30 1440 > th dose dependent rect. 9 10
433 712.01 temperature 30 1440 > th dose dependent no NA NA
632 713.57 temperature 30 1440 < th dose independent rect. 17 23
660 714.36 humidity 70 14400 < th dose dependent rect. 17 14
678 714.53 humidity 70 14400 < th dose dependent rect. 17 5
700 714.77 temperature 30 1440 < th dose independent rect. 9 19
701 714.80 temperature 30 1440 < th dose independent rect. 9 17
708 714.92 temperature 30 1440 < th dose independent rect. 9 10
715 714.95 temperature 30 1440 < th dose independent rect. 9 23
738 715.31 humidity 60 14400 < th dose dependent rect. 16 16
755 715.42 temperature 30 1440 < th dose independent rect. 7 21
770 715.45 temperature 30 1440 < th dose independent rect. 7 19
797 715.56 temperature 30 1440 < th dose independent rect. 7 12
804 715.58 temperature 30 1440 > th dose independent rect. 17 23
810 715.61 temperature 30 1440 < th dose independent rect. 22 21
827 715.65 temperature 30 1440 < th dose independent rect. 3 23
830 715.66 temperature 30 1440 < th dose independent no NA NA
862 715.75 temperature 30 1440 < th dose independent rect. 3 16
921 716.58 temperature 30 1440 > th dose independent rect. 9 10
955 716.67 temperature 25 1440 > th dose dependent rect. 7 1