Os12g0218800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0218800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.71	(0.0478)	R²	:	0.779
β₁	:	0.435	(0.243)	R²_dD	:	0.0043	R²_D	:	-0.189
β₂	:	0.638	(0.107)	R²_dC	:	0.0174	R²_C	:	-0.235
β₃	:	-2.05	(0.109)	R²_dE	:	0.236	R²_E	:	-0.251
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	2.6	(0.423)	R²_dD*E	:	0.046	R²_D*E	:	-0.167
γ₁	:	-3.39	(0.111)	R²_dN8	:	0.968	R²_N8	:	0.377
σ	:	0.768
deviance	:	271.67
__

_____

C
peak time of C	:	5
E
wheather	:	temperature
threshold	:	20
memory length	:	4220
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	5.12
open length of G	:	1.15

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
268.73	0.77	5.71	0.441	0.622	-2.04	1.14	2.67	-3.39	4.73	20	4219	5.12	0.966
296.15	0.802	5.69	1.5	0.598	-2.05	1.18	--	-3.22	4.79	19.96	4108	5.15	1.13
271.67	0.768	5.71	0.435	0.638	-2.05	--	2.6	-3.39	5	20	4220	5.12	1.15
293.44	0.798	5.58	1.57	0.653	-1.94	--	--	-3.06	4.95	19.85	4208	4.97	1.28
291.21	0.795	5.71	0.487	--	-2.09	--	2.6	-3.36	--	20	4106	5.12	1.17
489.22	1.04	5.39	2.64	0.752	--	0.69	--	-2.27	4.74	--	--	--	--
490.37	1.04	5.39	2.64	0.76	--	--	--	-2.27	4.95	--	--	--	--
311.11	0.822	5.58	1.55	--	-2.04	--	--	-3.05	--	19.85	4097	4.58	1.82
332.05	0.849	5.63	--	0.738	-2.25	--	--	-3.09	4.92	19.9	8436	5.13	1.47
520.8	1.07	5.4	2.67	--	--	--	--	-2.25	--	--	--	--	--
674.38	1.21	5.46	--	0.808	--	--	--	-2.57	4.84	--	--	--	--
303.99	0.812	5.57	--	--	-3.43	--	--	-3.11	--	18.73	22689	5.51	1.67
708.87	1.24	5.47	--	--	--	--	--	-2.55	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	259.10	atmosphere	1005	43200	> th	dose dependent	rect.	22	1
6	259.53	atmosphere	1010	43200	> th	dose dependent	rect.	22	5
8	259.61	atmosphere	1000	43200	> th	dose dependent	rect.	3	1
15	259.77	atmosphere	1010	43200	> th	dose dependent	rect.	1	1
22	259.94	atmosphere	1010	43200	< th	dose independent	rect.	23	1
35	260.14	atmosphere	1010	43200	> th	dose independent	rect.	22	1
44	260.25	atmosphere	1000	43200	> th	dose dependent	rect.	1	5
60	260.47	atmosphere	1000	43200	> th	dose dependent	rect.	23	7
73	260.61	atmosphere	1000	43200	> th	dose dependent	rect.	5	1
76	260.63	atmosphere	1010	43200	< th	dose independent	rect.	22	6
118	261.08	atmosphere	1010	43200	< th	dose independent	rect.	15	13
137	261.19	atmosphere	1010	43200	< th	dose independent	rect.	2	2
146	261.25	atmosphere	1010	43200	> th	dose independent	rect.	15	4
148	261.26	atmosphere	1010	43200	< th	dose independent	rect.	15	10
152	261.27	atmosphere	1010	43200	< th	dose independent	rect.	18	10
169	261.35	atmosphere	1010	43200	> th	dose independent	rect.	15	9
171	261.36	atmosphere	1010	43200	> th	dose independent	rect.	14	14
202	261.45	atmosphere	1010	43200	< th	dose independent	rect.	18	1
208	261.46	atmosphere	1010	43200	< th	dose independent	sin	14	NA
212	261.47	atmosphere	1010	43200	< th	dose independent	rect.	15	4
282	261.68	atmosphere	1010	43200	> th	dose independent	rect.	15	1
290	261.70	atmosphere	1010	43200	> th	dose independent	rect.	22	6
295	261.71	atmosphere	1010	43200	> th	dose independent	sin	15	NA
323	261.79	atmosphere	1010	43200	< th	dose independent	rect.	15	1
330	261.80	atmosphere	1010	43200	> th	dose dependent	sin	12	NA
333	261.81	atmosphere	1010	43200	> th	dose independent	rect.	3	1
456	262.07	atmosphere	1000	43200	> th	dose dependent	sin	9	NA
707	262.60	atmosphere	1010	43200	< th	dose independent	rect.	22	22
791	262.74	atmosphere	1010	43200	< th	dose independent	no	NA	NA
794	262.74	atmosphere	1010	43200	< th	dose independent	rect.	5	23
826	262.80	atmosphere	1010	43200	< th	dose independent	rect.	18	23
831	262.82	atmosphere	1010	43200	> th	dose independent	rect.	22	22
857	262.86	atmosphere	1010	43200	< th	dose independent	rect.	2	23
898	262.92	atmosphere	1010	43200	> th	dose independent	no	NA	NA
956	263.00	atmosphere	1010	43200	> th	dose independent	rect.	18	23
966	263.01	atmosphere	1010	43200	> th	dose independent	rect.	2	23