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Os12g0218300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.97 (0.0494) R2 : 0.846
β1 : 2.47 (0.196) R2dD : 0.0667 R2D : -0.0354
β2 : 1.04 (0.116) R2dC : 0.0278 R2C : -0.176
β3 : -2.26 (0.272) R2dE : 0.0294 R2E : -0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -4.55 (0.109) R2dN8 : 0.869 R2N8 : 0.684
σ : 0.913
deviance : 384.67
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C
peak time of C : 23.3
E
wheather : radiation
threshold : 0.05003
memory length : 1425
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
380.76 0.917 10 2.06 1.09 -0.591 -0.264 5.92 -4.58 23.3 0.43 1393 -- --
398.84 0.93 9.97 2.45 1.22 -1.26 -1.67 -- -4.6 22.9 0.1699 1433 -- --
380.75 0.909 10 2.07 1.07 -0.549 -- 6.21 -4.58 23.4 0.4471 1378 -- --
384.67 0.913 9.97 2.47 1.04 -2.26 -- -- -4.55 23.3 0.05003 1425 -- --
403.7 0.936 10 2.09 -- -2.05 -- 6.53 -4.62 -- 1.265e-06 1209 -- --
438.55 0.982 9.88 3.11 1.12 -- -0.822 -- -4.26 23.2 -- -- -- --
441.34 0.984 9.88 3.14 1.12 -- -- -- -4.26 23.3 -- -- -- --
411.47 0.945 10 2.59 -- -2.64 -- -- -4.6 -- 4.381e-08 1205 -- --
529.27 1.07 9.97 -- 1.32 -2.37 -- -- -4.81 23.3 0.01001 13140 -- --
519.74 1.07 9.85 3.17 -- -- -- -- -4.25 -- -- -- -- --
701.07 1.24 9.95 -- 1.15 -- -- -- -4.61 23.5 -- -- -- --
536.42 1.08 10.1 -- -- -4.2 -- -- -4.94 -- 8.842e-07 1339 -- --
784.42 1.31 9.93 -- -- -- -- -- -4.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 371.97 wind 9.0 14400 > th dose dependent rect. 13 2
2 372.93 wind 9.0 14400 > th dose independent rect. 13 1
3 373.75 wind 9.0 14400 < th dose independent rect. 13 1
4 373.75 wind 1.0 43200 < th dose independent rect. 20 2
5 374.32 wind 1.0 43200 < th dose dependent rect. 19 2
6 374.41 temperature 25.0 720 > th dose independent sin 7 NA
7 374.59 atmosphere 1005.0 43200 < th dose dependent rect. 15 2
10 375.09 wind 1.0 14400 < th dose independent rect. 20 4
11 375.22 precipitation 0.1 43200 > th dose independent rect. 17 2
13 375.48 precipitation 0.1 43200 < th dose independent rect. 17 2
14 375.48 precipitation 0.1 43200 < th dose dependent rect. 17 2
15 375.49 atmosphere 1005.0 43200 < th dose independent rect. 10 1
22 376.32 temperature 25.0 720 < th dose independent sin 6 NA
28 377.01 atmosphere 1005.0 14400 > th dose independent rect. 11 1
29 377.04 wind 1.0 43200 > th dose independent rect. 21 1
31 377.11 temperature 25.0 720 > th dose independent rect. 23 12
32 377.28 wind 1.0 43200 > th dose independent rect. 19 3
36 377.67 humidity 90.0 14400 < th dose dependent rect. 3 2
38 377.78 wind 9.0 14400 > th dose dependent rect. 22 17
47 378.14 wind 1.0 14400 < th dose independent rect. 22 2
50 378.61 temperature 25.0 720 > th dose independent rect. 22 15
64 379.26 humidity 80.0 14400 > th dose independent rect. 3 1
75 379.74 wind 1.0 43200 > th dose independent rect. 18 8
86 380.10 atmosphere 1005.0 43200 < th dose independent rect. 22 1
90 380.20 temperature 20.0 720 > th dose dependent sin 6 NA
92 380.24 temperature 20.0 720 > th dose dependent rect. 21 17
96 380.37 wind 9.0 14400 > th dose dependent rect. 10 5
99 380.42 radiation 1.0 1440 < th dose dependent rect. 11 20
104 380.60 wind 9.0 14400 > th dose dependent rect. 5 10
106 380.61 wind 9.0 14400 > th dose dependent rect. 3 12
112 380.71 wind 1.0 43200 < th dose independent rect. 17 9
114 380.75 wind 1.0 43200 > th dose independent rect. 21 4
122 380.86 radiation 1.0 1440 < th dose dependent sin 14 NA
123 380.88 wind 1.0 43200 > th dose independent rect. 19 6
149 381.33 atmosphere 1005.0 43200 > th dose independent rect. 22 1
167 381.67 temperature 25.0 720 < th dose independent rect. 22 15
175 381.81 precipitation 0.1 43200 > th dose dependent rect. 14 5
189 382.06 atmosphere 1010.0 43200 < th dose dependent rect. 22 1
224 382.63 atmosphere 1010.0 43200 < th dose dependent rect. 10 1
259 382.92 atmosphere 1005.0 43200 < th dose dependent rect. 12 16
283 383.09 atmosphere 1010.0 43200 < th dose dependent rect. 7 4
296 383.21 atmosphere 1005.0 43200 < th dose dependent sin 19 NA
297 383.21 atmosphere 1010.0 43200 < th dose dependent rect. 7 1
331 383.41 atmosphere 1005.0 43200 < th dose independent rect. 20 16
332 383.41 radiation 1.0 1440 < th dose dependent rect. 16 23
353 383.53 humidity 80.0 14400 < th dose independent rect. 3 1
366 383.58 wind 1.0 43200 < th dose dependent rect. 13 12
368 383.62 atmosphere 1005.0 43200 < th dose dependent rect. 2 1
379 383.67 radiation 1.0 1440 < th dose dependent rect. 21 22
388 383.70 radiation 1.0 1440 < th dose dependent rect. 23 20
394 383.73 radiation 1.0 1440 < th dose dependent rect. 3 16
398 383.73 radiation 1.0 1440 < th dose dependent rect. 3 23
399 383.74 radiation 1.0 1440 < th dose dependent no NA NA
402 383.74 radiation 1.0 1440 < th dose dependent rect. 3 21
407 383.74 radiation 1.0 1440 < th dose dependent rect. 1 23
461 383.87 wind 1.0 43200 > th dose independent rect. 23 1
476 383.93 radiation 1.0 1440 < th dose dependent rect. 13 13
479 383.93 atmosphere 1005.0 43200 < th dose dependent rect. 24 19
484 383.95 radiation 1.0 1440 < th dose dependent rect. 13 6
492 383.99 temperature 25.0 720 < th dose independent rect. 1 9
496 384.00 radiation 1.0 1440 < th dose dependent rect. 16 13
500 384.02 radiation 1.0 1440 < th dose dependent rect. 13 9
509 384.05 radiation 1.0 1440 < th dose dependent rect. 16 10
516 384.07 radiation 1.0 1440 < th dose dependent rect. 16 3
557 384.21 radiation 1.0 1440 < th dose dependent rect. 16 6
615 384.36 wind 1.0 43200 < th dose dependent rect. 15 11
632 384.41 wind 9.0 14400 > th dose independent rect. 22 17
703 384.69 atmosphere 1005.0 14400 < th dose independent rect. 10 13
772 384.92 atmosphere 1010.0 43200 < th dose dependent rect. 20 16
782 384.95 atmosphere 1005.0 43200 < th dose dependent no NA NA
812 385.03 wind 1.0 43200 < th dose dependent sin 17 NA
855 385.18 temperature 25.0 1440 < th dose independent rect. 1 12
960 385.47 temperature 20.0 720 > th dose dependent no NA NA
977 385.51 wind 9.0 14400 > th dose independent rect. 3 12