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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0218100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.63 (0.112) R2 : 0.685
β1 : -5.05 (0.825) R2dD : 0.367 R2D : -1.32
β2 : 0.883 (0.154) R2dC : 0.023 R2C : -0.471
β3 : -5.56 (0.489) R2dE : 0.829 R2E : -0.44
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 33 (3.94) R2dD*E : 0.941 R2D*E : -0.974
γ1 : -3.26 (0.141) R2dN8 : 0.58 R2N8 : 0.354
σ : 1.14
deviance : 599.52
__
_____
C
peak time of C : 3.41
E
wheather : temperature
threshold : 29.99
memory length : 2849
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
598.55 1.15 7.63 -5.08 0.877 -5.58 0.564 33.2 -3.26 3.3 30 2850 -- --
662.28 1.2 7.26 -2.93 0.439 -4.58 0.829 -- -4.94 2.8 20.11 38648 -- --
599.52 1.14 7.63 -5.05 0.883 -5.56 -- 33 -3.26 3.41 29.99 2849 -- --
637.43 1.18 7.32 -2.88 0.93 -4.48 -- -- -4.95 2.83 19.71 46125 -- --
638.84 1.18 7.61 -4.91 -- -5.72 -- 32.9 -3.23 -- 29.94 2699 -- --
822.4 1.34 6.9 2.13 1.01 -- 0.734 -- -3.12 2.54 -- -- -- --
824.29 1.34 6.9 2.11 1.01 -- -- -- -3.12 2.63 -- -- -- --
686.7 1.22 7.3 -2.79 -- -4.43 -- -- -4.9 -- 19.81 45685 -- --
657.05 1.19 7.2 -- 0.886 -2.99 -- -- -4.3 3.19 21.8 9960 -- --
884.43 1.39 6.9 2.16 -- -- -- -- -3.1 -- -- -- -- --
941.93 1.44 6.96 -- 1.06 -- -- -- -3.36 2.66 -- -- -- --
673.46 1.21 7.14 -- -- -2.87 -- -- -4.16 -- 25.2 9825 -- --
1007.03 1.48 6.95 -- -- -- -- -- -3.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 607.37 radiation 1.0 14400 < th dose dependent rect. 2 3
2 608.72 radiation 1.0 14400 < th dose dependent rect. 4 1
5 612.17 wind 1.0 43200 < th dose dependent rect. 24 4
6 612.59 temperature 25.0 1440 > th dose dependent rect. 19 14
7 613.34 wind 1.0 43200 < th dose dependent rect. 1 1
10 616.77 precipitation 0.1 43200 < th dose independent rect. 9 2
11 616.77 precipitation 0.1 43200 < th dose dependent rect. 9 2
15 618.05 precipitation 0.1 43200 > th dose independent rect. 9 2
16 618.05 precipitation 0.1 43200 > th dose dependent rect. 9 2
17 618.33 temperature 25.0 14400 > th dose dependent rect. 4 2
28 621.24 wind 5.0 14400 < th dose independent rect. 10 1
29 621.82 wind 3.0 43200 > th dose independent rect. 9 2
31 623.11 wind 1.0 43200 < th dose dependent rect. 8 1
35 624.29 temperature 25.0 1440 > th dose dependent sin 10 NA
36 624.46 radiation 1.0 1440 < th dose dependent rect. 21 8
37 624.54 radiation 1.0 14400 < th dose dependent rect. 21 8
38 624.68 temperature 25.0 4320 > th dose dependent rect. 21 1
39 624.75 temperature 25.0 14400 > th dose independent rect. 23 14
51 625.71 temperature 25.0 1440 > th dose dependent rect. 2 6
52 625.72 temperature 25.0 43200 > th dose independent rect. 12 1
53 625.77 wind 3.0 43200 < th dose independent rect. 8 3
54 625.79 temperature 25.0 14400 < th dose independent rect. 24 12
62 626.35 temperature 25.0 14400 > th dose independent sin 7 NA
66 626.70 temperature 25.0 1440 > th dose dependent rect. 19 3
73 626.90 temperature 20.0 43200 > th dose independent rect. 21 1
80 627.11 wind 7.0 43200 > th dose dependent rect. 10 4
90 627.38 temperature 20.0 43200 < th dose independent rect. 21 1
94 627.50 temperature 25.0 14400 > th dose independent rect. 4 1
102 627.69 temperature 25.0 43200 < th dose independent rect. 11 2
109 627.81 temperature 25.0 14400 < th dose independent sin 7 NA
118 627.98 radiation 1.0 1440 < th dose dependent rect. 18 11
147 629.16 temperature 25.0 14400 > th dose dependent rect. 15 15
165 629.52 temperature 25.0 43200 > th dose independent rect. 17 1
166 629.52 temperature 25.0 14400 > th dose independent rect. 16 14
168 629.54 temperature 30.0 43200 < th dose independent rect. 15 1
178 629.86 temperature 25.0 43200 < th dose independent rect. 17 1
180 629.88 wind 9.0 43200 > th dose independent rect. 10 4
192 630.10 temperature 30.0 1440 < th dose independent rect. 18 21
198 630.20 temperature 25.0 1440 > th dose independent rect. 6 1
215 630.40 temperature 20.0 43200 < th dose independent rect. 6 1
216 630.40 temperature 20.0 43200 > th dose independent rect. 7 2
219 630.44 wind 5.0 43200 < th dose dependent rect. 8 3
230 630.68 temperature 30.0 43200 > th dose independent rect. 15 1
247 630.88 temperature 25.0 1440 < th dose independent rect. 6 1
249 630.90 temperature 25.0 43200 > th dose independent rect. 4 9
254 630.97 temperature 25.0 43200 > th dose dependent rect. 12 1
261 631.03 temperature 30.0 4320 < th dose independent rect. 14 22
268 631.09 temperature 20.0 43200 < th dose independent rect. 23 1
272 631.13 temperature 30.0 1440 > th dose independent rect. 18 21
284 631.23 temperature 25.0 14400 > th dose dependent sin 14 NA
292 631.37 temperature 20.0 43200 > th dose independent rect. 16 7
293 631.37 temperature 25.0 43200 > th dose dependent rect. 14 1
299 631.41 temperature 25.0 43200 > th dose dependent rect. 12 3
310 631.45 temperature 20.0 43200 < th dose independent rect. 16 7
312 631.50 temperature 25.0 43200 < th dose independent rect. 4 9
324 631.56 radiation 40.0 14400 > th dose dependent rect. 15 1
364 631.76 temperature 25.0 14400 > th dose independent rect. 11 19
383 631.86 wind 7.0 43200 > th dose dependent rect. 9 6
386 631.87 temperature 25.0 14400 < th dose independent rect. 16 14
389 631.88 temperature 20.0 43200 < th dose independent rect. 2 1
403 631.94 temperature 25.0 14400 > th dose dependent rect. 16 1
413 632.01 temperature 20.0 43200 > th dose independent rect. 7 15
449 632.20 temperature 20.0 43200 > th dose independent rect. 2 1
472 632.33 temperature 20.0 43200 > th dose independent rect. 23 1
478 632.36 temperature 25.0 14400 > th dose independent rect. 16 21
486 632.39 temperature 30.0 4320 > th dose independent rect. 14 22
487 632.40 temperature 20.0 43200 < th dose independent rect. 23 4
495 632.42 wind 3.0 14400 > th dose dependent rect. 10 1
522 632.56 wind 9.0 43200 < th dose independent rect. 10 4
565 632.74 radiation 30.0 4320 > th dose independent rect. 7 1
581 632.75 temperature 20.0 43200 < th dose independent rect. 7 16
603 632.88 wind 9.0 43200 < th dose dependent rect. 9 3
618 632.94 wind 1.0 43200 > th dose dependent rect. 9 3
619 632.95 radiation 30.0 4320 < th dose independent rect. 7 1
678 633.17 temperature 30.0 1440 < th dose independent rect. 23 16
683 633.20 temperature 20.0 43200 < th dose independent rect. 1 6
698 633.24 temperature 20.0 43200 < th dose independent rect. 21 10
713 633.29 radiation 1.0 1440 < th dose dependent rect. 18 9
723 633.32 temperature 30.0 1440 < th dose independent rect. 8 7
731 633.34 temperature 30.0 14400 < th dose independent rect. 14 13
739 633.36 temperature 30.0 1440 < th dose independent rect. 4 11
742 633.37 temperature 30.0 1440 < th dose independent sin 5 NA
743 633.37 wind 9.0 43200 > th dose independent rect. 9 7
762 633.41 temperature 30.0 14400 < th dose independent rect. 14 5
769 633.42 temperature 30.0 14400 < th dose independent rect. 14 8
771 633.42 temperature 30.0 14400 < th dose independent rect. 14 18
840 633.66 temperature 20.0 43200 > th dose independent rect. 23 4
848 633.69 wind 7.0 43200 < th dose independent rect. 5 9
853 633.70 temperature 25.0 43200 > th dose independent rect. 10 8
910 633.88 humidity 60.0 4320 < th dose dependent rect. 17 3
931 633.91 temperature 30.0 14400 > th dose independent rect. 14 4
951 633.98 wind 7.0 43200 < th dose independent rect. 4 11
961 634.01 wind 1.0 43200 < th dose dependent rect. 19 17
973 634.04 wind 7.0 43200 < th dose independent rect. 8 6
979 634.05 wind 7.0 43200 > th dose independent rect. 5 9
999 634.09 radiation 1.0 1440 < th dose dependent rect. 18 2