Os12g0217800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0217800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 536.48 | 1.09 | 8.29 | -0.349 | 0.92 | -3.55 | 0.493 | 33.4 | -4.17 | 2.42 | 29.9 | 4002 | -- | -- |
| 616.4 | 1.16 | 7.7 | 3.73 | 0.699 | -1.36 | -0.602 | -- | -4.12 | 2.21 | 16.7 | 47520 | -- | -- |
| 537.35 | 1.08 | 8.29 | -0.352 | 0.921 | -3.55 | -- | 33.3 | -4.17 | 2.42 | 29.9 | 3998 | -- | -- |
| 610.96 | 1.15 | 7.68 | 4.1 | 0.87 | -1.25 | -- | -- | -4.07 | 2 | 16.63 | 47520 | -- | -- |
| 586.06 | 1.13 | 8.28 | -0.347 | -- | -3.71 | -- | 33.5 | -4.14 | -- | 29.84 | 3926 | -- | -- |
| 624.9 | 1.17 | 7.59 | 5.34 | 0.885 | -- | 0.142 | -- | -3.69 | 1.99 | -- | -- | -- | -- |
| 624.98 | 1.17 | 7.59 | 5.34 | 0.885 | -- | -- | -- | -3.69 | 1.99 | -- | -- | -- | -- |
| 656.49 | 1.19 | 7.67 | 4.05 | -- | -1.33 | -- | -- | -4.08 | -- | 16.77 | 47520 | -- | -- |
| 790.88 | 1.31 | 7.62 | -- | 0.0661 | -3.67 | -- | -- | -4.59 | 21 | 18.4 | 47520 | -- | -- |
| 672.17 | 1.21 | 7.58 | 5.37 | -- | -- | -- | -- | -3.67 | -- | -- | -- | -- | -- |
| 1375.73 | 1.74 | 7.73 | -- | 0.986 | -- | -- | -- | -4.29 | 2.12 | -- | -- | -- | -- |
| 745.08 | 1.27 | 7.94 | -- | -- | -4.16 | -- | -- | -5.26 | -- | 18.49 | 47520 | -- | -- |
| 1433.93 | 1.77 | 7.72 | -- | -- | -- | -- | -- | -4.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 524.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 2 | 526.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 3 | 526.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 5 | 526.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 8 | 527.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 104 | 539.59 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 116 | 540.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 117 | 541.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 122 | 541.83 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 179 | 546.56 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 199 | 547.80 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 231 | 549.82 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 236 | 550.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 240 | 550.23 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 265 | 550.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 267 | 550.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 269 | 550.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 277 | 550.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 287 | 551.11 | temperature | 30 | 4320 | < th | dose independent | sin | 4 | NA |
| 290 | 551.27 | temperature | 30 | 4320 | > th | dose independent | sin | 4 | NA |
| 293 | 551.34 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 310 | 552.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 18 |
| 311 | 552.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 20 |
| 312 | 552.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 14 |
| 313 | 552.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 319 | 552.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 21 |
| 321 | 552.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 322 | 552.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 327 | 552.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 357 | 552.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 371 | 552.13 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 376 | 552.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 21 |
| 386 | 552.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 455 | 552.40 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 457 | 552.40 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 628 | 553.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 634 | 553.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 705 | 554.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 706 | 554.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 720 | 554.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 735 | 554.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 748 | 554.43 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 817 | 555.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 833 | 555.36 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 858 | 555.69 | temperature | 30 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 885 | 555.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 4 |
| 928 | 556.68 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 956 | 556.85 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 959 | 556.85 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 979 | 557.07 | temperature | 30 | 4320 | > th | dose dependent | sin | 0 | NA |