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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0216500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.73 (0.0238) R2 : 0.929
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.87 (0.0501) R2dN8 : 1.2 R2N8 : 0.929
σ : 0.448
deviance : 92.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.07 0.428 6.71 -0.101 0.2 -0.645 -0.919 -0.429 -3.78 19 85.02 6699 -- --
83.29 0.425 6.71 -0.0902 0.214 -0.669 -0.975 -- -3.77 19 85 6627 -- --
84.73 0.429 6.71 -0.0631 0.224 -0.606 -- -0.521 -3.79 17.3 84.73 6543 -- --
85.09 0.43 6.71 -0.0539 0.247 -0.617 -- -- -3.78 17.3 85 6533 -- --
86.78 0.434 6.7 -0.101 -- -0.608 -- -0.514 -3.78 -- 84.1 7052 -- --
88.64 0.441 6.73 -0.033 0.164 -- -0.91 -- -3.87 19 -- -- -- --
89.79 0.444 6.73 -0.0105 0.212 -- -- -- -3.87 16.6 -- -- -- --
87.13 0.435 6.7 -0.0757 -- -0.625 -- -- -3.77 -- 84.81 7052 -- --
85.16 0.43 6.71 -- 0.252 -0.61 -- -- -3.78 17.3 84 6514 -- --
92.19 0.449 6.73 -0.0187 -- -- -- -- -3.87 -- -- -- -- --
89.8 0.443 6.73 -- 0.212 -- -- -- -3.87 16.6 -- -- -- --
87.27 0.435 6.7 -- -- -0.614 -- -- -3.77 -- 84 7052 -- --
92.19 0.448 6.73 -- -- -- -- -- -3.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.43 atmosphere 1010.0 90 < th dose dependent rect. 12 7
2 80.58 wind 3.0 14400 < th dose independent rect. 2 2
3 80.62 wind 9.0 14400 < th dose independent rect. 10 1
8 80.80 wind 3.0 43200 < th dose dependent rect. 6 1
10 80.82 wind 3.0 14400 > th dose independent rect. 2 2
13 80.85 wind 3.0 14400 > th dose independent rect. 1 4
22 80.95 wind 3.0 43200 < th dose dependent rect. 1 1
29 81.04 wind 3.0 43200 < th dose dependent rect. 21 10
33 81.07 wind 1.0 43200 < th dose independent rect. 19 18
40 81.11 wind 1.0 43200 < th dose dependent rect. 16 21
41 81.11 wind 1.0 43200 < th dose dependent rect. 20 22
55 81.19 wind 1.0 43200 < th dose dependent rect. 9 23
57 81.22 wind 1.0 43200 > th dose independent rect. 20 17
58 81.22 wind 1.0 43200 < th dose dependent rect. 22 20
59 81.23 wind 9.0 14400 > th dose independent rect. 10 1
63 81.24 wind 1.0 43200 < th dose dependent rect. 22 23
68 81.26 wind 1.0 43200 < th dose dependent rect. 3 23
71 81.27 wind 1.0 43200 < th dose dependent rect. 1 23
74 81.30 wind 1.0 43200 < th dose dependent no NA NA
88 81.33 wind 1.0 43200 < th dose dependent rect. 20 17
92 81.34 wind 1.0 43200 < th dose independent rect. 17 20
136 81.49 wind 5.0 14400 < th dose dependent rect. 3 1
151 81.54 precipitation 0.1 14400 > th dose dependent rect. 15 2
152 81.54 wind 5.0 14400 < th dose dependent rect. 3 3
161 81.55 wind 3.0 14400 < th dose dependent rect. 3 5
165 81.55 wind 1.0 43200 < th dose dependent rect. 7 23
169 81.57 humidity 80.0 14400 > th dose independent rect. 2 1
170 81.57 precipitation 0.1 14400 > th dose dependent rect. 13 4
176 81.58 precipitation 0.1 14400 > th dose dependent rect. 18 2
177 81.58 wind 5.0 14400 < th dose dependent rect. 1 3
192 81.61 precipitation 0.1 14400 > th dose independent rect. 15 2
201 81.64 humidity 80.0 14400 < th dose independent rect. 2 1
209 81.65 precipitation 0.1 14400 < th dose independent rect. 15 2
214 81.65 precipitation 0.1 14400 < th dose dependent rect. 15 2
233 81.69 wind 3.0 43200 < th dose dependent sin 10 NA
250 81.72 wind 1.0 14400 > th dose dependent rect. 1 3
257 81.73 wind 1.0 14400 > th dose dependent rect. 1 5
262 81.74 precipitation 0.1 14400 > th dose independent rect. 13 4
269 81.75 wind 1.0 14400 > th dose dependent rect. 3 3
281 81.77 humidity 90.0 14400 > th dose dependent rect. 16 1
295 81.80 wind 3.0 43200 < th dose independent rect. 6 1
314 81.83 wind 1.0 14400 > th dose dependent rect. 3 1
338 81.86 precipitation 0.1 14400 < th dose independent rect. 13 4
341 81.86 wind 3.0 1440 < th dose dependent rect. 9 4
342 81.86 precipitation 0.1 14400 < th dose dependent rect. 13 4
376 81.90 wind 3.0 43200 < th dose dependent rect. 22 6
426 81.97 wind 3.0 43200 > th dose independent rect. 6 1
436 81.98 precipitation 0.1 4320 < th dose independent rect. 4 2
438 81.98 precipitation 0.1 4320 < th dose dependent rect. 4 2
470 82.02 precipitation 0.1 14400 > th dose independent rect. 18 2
491 82.06 precipitation 0.1 4320 > th dose independent rect. 3 4
517 82.10 precipitation 0.1 14400 < th dose independent rect. 18 2
518 82.10 precipitation 0.1 14400 < th dose dependent rect. 18 2
519 82.10 precipitation 0.1 4320 > th dose dependent rect. 3 4
534 82.12 atmosphere 1010.0 270 < th dose dependent rect. 13 1
558 82.14 precipitation 0.1 14400 > th dose dependent rect. 3 14
563 82.15 humidity 80.0 14400 < th dose dependent rect. 2 1
569 82.16 humidity 80.0 14400 < th dose independent rect. 5 1
572 82.16 wind 3.0 1440 < th dose independent rect. 8 5
586 82.17 wind 9.0 14400 < th dose dependent rect. 24 13
590 82.18 wind 1.0 43200 < th dose independent rect. 10 23
594 82.19 wind 1.0 4320 < th dose independent rect. 18 1
603 82.19 wind 1.0 14400 > th dose dependent rect. 24 13
616 82.21 wind 1.0 720 > th dose independent rect. 9 16
621 82.21 wind 5.0 14400 < th dose dependent rect. 24 13
624 82.22 humidity 80.0 14400 > th dose independent rect. 5 1
629 82.22 wind 1.0 43200 > th dose independent rect. 11 22
666 82.25 wind 3.0 270 < th dose independent rect. 12 2
667 82.25 humidity 80.0 14400 > th dose independent rect. 1 5
668 82.25 precipitation 0.1 1440 < th dose independent rect. 21 5
669 82.25 wind 3.0 1440 > th dose independent rect. 8 6
674 82.25 precipitation 0.1 1440 < th dose dependent rect. 21 5
695 82.27 precipitation 0.1 14400 > th dose independent rect. 3 17
701 82.27 precipitation 0.1 14400 > th dose dependent rect. 5 12
726 82.30 wind 1.0 43200 < th dose independent rect. 11 19
731 82.30 precipitation 0.1 14400 > th dose dependent rect. 7 10
734 82.31 precipitation 0.1 14400 > th dose independent rect. 12 8
746 82.32 precipitation 0.1 14400 < th dose independent rect. 3 17
754 82.32 precipitation 0.1 14400 < th dose dependent rect. 3 17
759 82.33 wind 7.0 14400 > th dose dependent rect. 10 1
772 82.34 humidity 80.0 14400 < th dose independent rect. 2 4
781 82.34 atmosphere 1015.0 90 < th dose dependent rect. 12 11
789 82.35 wind 5.0 270 < th dose dependent rect. 13 1
798 82.36 wind 1.0 4320 > th dose independent rect. 18 1
809 82.37 precipitation 0.1 1440 < th dose independent rect. 19 7
811 82.37 precipitation 0.1 14400 < th dose independent rect. 12 8
816 82.37 precipitation 0.1 4320 > th dose dependent rect. 13 1
819 82.37 precipitation 0.1 1440 < th dose dependent rect. 19 7
820 82.37 precipitation 0.1 14400 < th dose dependent rect. 12 8
846 82.39 precipitation 0.1 14400 > th dose independent rect. 5 15
852 82.39 wind 1.0 43200 < th dose dependent rect. 5 8
881 82.41 wind 5.0 270 < th dose dependent rect. 11 7
895 82.42 precipitation 0.1 14400 > th dose independent rect. 9 11
910 82.43 precipitation 0.1 14400 > th dose independent rect. 7 13
921 82.44 wind 3.0 14400 < th dose independent sin 9 NA
949 82.45 precipitation 0.1 14400 < th dose independent rect. 5 15
952 82.45 wind 1.0 43200 < th dose dependent sin 3 NA
964 82.45 precipitation 0.1 14400 < th dose dependent rect. 5 15
968 82.46 precipitation 0.1 14400 < th dose independent rect. 9 11
975 82.46 precipitation 0.1 14400 < th dose dependent rect. 9 11
985 82.47 wind 1.0 14400 > th dose dependent sin 7 NA