Os12g0215900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0215900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.28 | 0.755 | 8.45 | -2.01 | 0.00939 | 1.57 | 1.7 | -0.385 | 0.821 | 5.79 | 28.9 | 4310 | -- | -- |
| 258.29 | 0.749 | 8.45 | -2.06 | 0.0313 | 1.56 | 1.76 | -- | 0.812 | 5.71 | 28.82 | 4283 | -- | -- |
| 265.25 | 0.759 | 8.44 | -1.9 | 0.0464 | 1.6 | -- | -0.644 | 0.849 | 8.81 | 28.9 | 4314 | -- | -- |
| 265.18 | 0.758 | 8.46 | -2.07 | 0.0612 | 1.53 | -- | -- | 0.807 | 9.22 | 28.8 | 4331 | -- | -- |
| 265.39 | 0.759 | 8.44 | -1.92 | -- | 1.6 | -- | -0.63 | 0.838 | -- | 28.9 | 4314 | -- | -- |
| 338.52 | 0.863 | 8.48 | -2.55 | 0.014 | -- | -1.56 | -- | 0.743 | 18.1 | -- | -- | -- | -- |
| 343.08 | 0.867 | 8.48 | -2.53 | 0.15 | -- | -- | -- | 0.74 | 12.3 | -- | -- | -- | -- |
| 265.38 | 0.759 | 8.46 | -2.08 | -- | 1.53 | -- | -- | 0.801 | -- | 28.8 | 4331 | -- | -- |
| 363.46 | 0.888 | 8.38 | -- | 0.0973 | 2.12 | -- | -- | 1.15 | 10 | 27.02 | 4401 | -- | -- |
| 344.49 | 0.867 | 8.48 | -2.53 | -- | -- | -- | -- | 0.737 | -- | -- | -- | -- | -- |
| 511.31 | 1.06 | 8.41 | -- | 0.189 | -- | -- | -- | 1.02 | 13 | -- | -- | -- | -- |
| 272.41 | 0.769 | 8.24 | -- | -- | 2.3 | -- | -- | 1.79 | -- | 21.39 | 47520 | -- | -- |
| 513.52 | 1.06 | 8.42 | -- | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 3 | 254.60 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 4 | 254.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 5 | 254.67 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 10 | 255.09 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 11 | 255.10 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 30 | 255.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 39 | 256.10 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 50 | 256.45 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 67 | 256.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 93 | 257.35 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 120 | 257.92 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 159 | 258.78 | temperature | 25.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 168 | 258.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 181 | 259.21 | temperature | 25.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 190 | 259.44 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 203 | 259.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 240 | 260.13 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 242 | 260.16 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 257 | 260.35 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 261 | 260.42 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 267 | 260.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 291 | 260.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 292 | 260.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 305 | 260.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 311 | 260.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 313 | 260.91 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 324 | 261.03 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 326 | 261.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 335 | 261.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 342 | 261.15 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 344 | 261.16 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 345 | 261.17 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 348 | 261.19 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 358 | 261.21 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 361 | 261.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 373 | 261.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 374 | 261.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 376 | 261.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 427 | 261.46 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 466 | 261.60 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 487 | 261.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 489 | 261.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 505 | 261.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 506 | 261.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 538 | 261.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 554 | 262.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 616 | 262.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 654 | 262.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 655 | 262.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 18 |
| 661 | 262.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 672 | 262.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 678 | 262.41 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 683 | 262.43 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 684 | 262.43 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 694 | 262.44 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 701 | 262.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 739 | 262.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 782 | 262.65 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 835 | 262.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 836 | 262.78 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 9 | NA |
| 927 | 263.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 929 | 263.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 978 | 263.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 988 | 263.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 17 |