Os12g0212900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0212900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.66 | 0.401 | 8.45 | -0.468 | 0.258 | 1.66 | -0.416 | 1.45 | -0.155 | 15.8 | 11.75 | 198 | -- | -- |
| 73.84 | 0.4 | 8.48 | -0.666 | 0.271 | 1.64 | -0.0626 | -- | -0.196 | 16.1 | 14.3 | 191 | -- | -- |
| 73.06 | 0.398 | 8.46 | -0.504 | 0.266 | 1.62 | -- | 1.14 | -0.152 | 15.7 | 10.71 | 190 | -- | -- |
| 73.82 | 0.4 | 8.48 | -0.682 | 0.267 | 1.67 | -- | -- | -0.212 | 15.9 | 14.07 | 190 | -- | -- |
| 75.63 | 0.405 | 8.47 | -0.587 | -- | 1.93 | -- | 1.1 | -0.212 | -- | 11.68 | 184 | -- | -- |
| 101.97 | 0.473 | 8.43 | -0.333 | 0.743 | -- | 0.232 | -- | 0.0193 | 16 | -- | -- | -- | -- |
| 102.13 | 0.473 | 8.43 | -0.33 | 0.744 | -- | -- | -- | 0.0206 | 16 | -- | -- | -- | -- |
| 76.52 | 0.407 | 8.49 | -0.75 | -- | 1.96 | -- | -- | -0.257 | -- | 12.49 | 186 | -- | -- |
| 85.02 | 0.429 | 8.46 | -- | 0.341 | 1.4 | -- | -- | -0.108 | 15.4 | 14.2 | 200 | -- | -- |
| 132.38 | 0.538 | 8.43 | -0.361 | -- | -- | -- | -- | 0.000744 | -- | -- | -- | -- | -- |
| 105.01 | 0.479 | 8.42 | -- | 0.751 | -- | -- | -- | 0.0574 | 16 | -- | -- | -- | -- |
| 88.41 | 0.438 | 8.46 | -- | -- | 1.37 | -- | -- | -0.145 | -- | 20 | 182 | -- | -- |
| 135.82 | 0.544 | 8.42 | -- | -- | -- | -- | -- | 0.0408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 5 | 72.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 16 | 72.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 27 | 73.47 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 30 | 73.77 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 34 | 73.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 60 | 74.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 66 | 74.79 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 76 | 74.97 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 77 | 74.98 | temperature | 10.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 100 | 75.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 101 | 75.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 105 | 75.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 117 | 75.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 191 | 75.99 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 198 | 76.04 | temperature | 30.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 204 | 76.09 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 208 | 76.11 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 230 | 76.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 234 | 76.31 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 235 | 76.31 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 243 | 76.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 266 | 76.50 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 276 | 76.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 339 | 76.90 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 411 | 77.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 434 | 77.31 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 478 | 77.49 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 505 | 77.58 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 543 | 77.69 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 553 | 77.72 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 613 | 77.87 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 628 | 77.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 639 | 77.94 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 665 | 78.02 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 11 | 10 |
| 688 | 78.07 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 689 | 78.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 722 | 78.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 743 | 78.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 747 | 78.13 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 856 | 78.18 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 866 | 78.20 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 867 | 78.20 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 930 | 78.29 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 977 | 78.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |