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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0211600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0475) R2 : 0.179
β1 : 1.08 (0.174) R2dD : 0.0721 R2D : 0.0778
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.659 (0.101) R2dN8 : 0.102 R2N8 : 0.107
σ : 0.892
deviance : 364.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.27 0.863 4.11 1.08 0.351 0.831 1.19 -1.82 -0.725 18.9 40.58 243 -- --
339.32 0.858 4.11 1.15 0.351 0.789 1.08 -- -0.703 19 39.77 245 -- --
340.93 0.86 4.11 1.06 0.348 0.858 -- -1.71 -0.725 19 40.59 243 -- --
342.65 0.862 4.11 1.13 0.35 0.817 -- -- -0.695 19 39.78 249 -- --
346 0.866 4.11 1.11 -- 0.914 -- -1.02 -0.719 -- 41.54 409 -- --
349.64 0.877 4.1 1.1 0.478 -- 0.956 -- -0.651 17.9 -- -- -- --
351.34 0.878 4.1 1.1 0.492 -- -- -- -0.646 17.1 -- -- -- --
344.58 0.865 4.1 1.08 -- 0.979 -- -- -0.699 -- 48.13 409 -- --
374.31 0.901 4.14 -- 0.345 0.836 -- -- -0.829 18.8 40.08 257 -- --
364.01 0.892 4.09 1.08 -- -- -- -- -0.659 -- -- -- -- --
383.12 0.916 4.12 -- 0.473 -- -- -- -0.768 17.2 -- -- -- --
374.65 0.901 4.13 -- -- 0.828 -- -- -0.817 -- 46.9 519 -- --
394.82 0.927 4.12 -- -- -- -- -- -0.778 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.28 humidity 80.0 14400 < th dose independent rect. 19 3
2 326.39 wind 7.0 4320 > th dose independent rect. 14 1
4 326.53 humidity 80.0 14400 < th dose independent rect. 20 1
5 326.64 wind 1.0 43200 < th dose independent rect. 5 6
6 326.65 wind 7.0 4320 < th dose independent rect. 14 1
7 327.22 radiation 1.0 1440 > th dose independent rect. 11 1
9 327.41 wind 1.0 43200 < th dose independent rect. 2 17
11 327.57 wind 1.0 43200 < th dose independent rect. 4 8
12 327.61 humidity 60.0 14400 > th dose independent rect. 14 3
15 327.79 radiation 10.0 14400 > th dose dependent rect. 5 1
27 327.88 radiation 1.0 1440 > th dose independent rect. 8 5
29 327.93 humidity 60.0 14400 < th dose independent rect. 14 3
30 328.00 wind 1.0 43200 < th dose independent rect. 2 15
31 328.05 wind 1.0 43200 < th dose independent rect. 6 4
35 328.14 wind 1.0 43200 < th dose independent rect. 2 19
41 328.32 wind 1.0 43200 < th dose independent rect. 2 12
51 328.52 wind 1.0 43200 < th dose dependent rect. 4 15
52 328.54 precipitation 0.1 10 > th dose dependent rect. 3 3
56 328.55 precipitation 0.1 10 > th dose independent rect. 3 3
101 328.65 humidity 70.0 14400 < th dose dependent rect. 16 1
102 328.68 wind 1.0 43200 > th dose independent rect. 4 7
111 328.84 atmosphere 995.0 43200 < th dose dependent rect. 12 15
112 328.88 atmosphere 995.0 43200 < th dose independent rect. 23 15
121 329.02 humidity 80.0 14400 > th dose independent rect. 19 3
122 329.02 atmosphere 995.0 43200 > th dose independent rect. 23 15
126 329.11 atmosphere 995.0 43200 < th dose dependent rect. 12 20
127 329.12 atmosphere 995.0 43200 < th dose independent rect. 12 22
147 329.32 atmosphere 995.0 43200 > th dose independent rect. 16 22
148 329.32 atmosphere 995.0 43200 < th dose dependent rect. 13 13
149 329.33 atmosphere 995.0 43200 > th dose independent rect. 1 11
152 329.35 atmosphere 995.0 43200 < th dose dependent sin 16 NA
154 329.36 atmosphere 995.0 43200 < th dose independent rect. 2 9
157 329.37 wind 5.0 4320 > th dose dependent rect. 13 2
161 329.38 atmosphere 995.0 43200 > th dose independent rect. 9 22
162 329.39 atmosphere 995.0 43200 > th dose independent rect. 2 9
163 329.39 atmosphere 995.0 43200 < th dose independent rect. 10 19
164 329.40 atmosphere 995.0 43200 < th dose independent rect. 15 22
171 329.42 atmosphere 995.0 43200 > th dose independent rect. 11 22
180 329.44 atmosphere 995.0 43200 < th dose dependent sin 8 NA
184 329.46 atmosphere 995.0 43200 < th dose independent rect. 5 3
185 329.46 atmosphere 995.0 43200 < th dose independent rect. 4 5
186 329.46 atmosphere 995.0 43200 < th dose independent rect. 3 7
188 329.46 atmosphere 995.0 43200 < th dose dependent rect. 2 7
197 329.51 atmosphere 995.0 43200 < th dose independent sin 6 NA
198 329.52 atmosphere 995.0 43200 > th dose independent rect. 3 7
211 329.57 atmosphere 995.0 43200 > th dose independent sin 6 NA
213 329.57 atmosphere 995.0 43200 > th dose independent rect. 4 5
229 329.63 atmosphere 995.0 43200 < th dose dependent rect. 4 4
230 329.63 atmosphere 995.0 43200 < th dose dependent rect. 23 11
233 329.65 humidity 70.0 14400 < th dose independent rect. 16 16
238 329.67 wind 1.0 43200 < th dose independent sin 4 NA
255 329.71 wind 1.0 43200 < th dose dependent rect. 4 17
318 329.97 wind 1.0 43200 < th dose dependent rect. 6 4
324 330.01 wind 1.0 43200 < th dose dependent rect. 4 13
327 330.03 atmosphere 995.0 43200 > th dose independent rect. 5 3
335 330.07 atmosphere 995.0 43200 > th dose independent rect. 21 21
346 330.10 radiation 1.0 1440 > th dose independent rect. 10 3
350 330.11 atmosphere 995.0 43200 > th dose independent no NA NA
356 330.12 wind 1.0 43200 < th dose dependent rect. 2 17
370 330.17 humidity 70.0 14400 > th dose independent rect. 16 15
397 330.29 humidity 70.0 14400 > th dose independent rect. 16 12
403 330.30 humidity 70.0 14400 > th dose independent rect. 16 7
414 330.33 humidity 60.0 14400 < th dose independent rect. 7 10
438 330.42 humidity 60.0 14400 > th dose independent rect. 21 8
468 330.53 humidity 60.0 14400 > th dose independent rect. 21 20
471 330.54 humidity 60.0 14400 > th dose independent rect. 7 10
484 330.55 radiation 10.0 4320 < th dose independent rect. 21 8
487 330.57 humidity 70.0 14400 < th dose independent rect. 18 14
503 330.62 humidity 70.0 14400 > th dose independent rect. 18 13
507 330.64 atmosphere 995.0 43200 < th dose independent no NA NA
510 330.64 atmosphere 995.0 43200 < th dose independent rect. 21 22
541 330.74 temperature 15.0 14400 > th dose independent rect. 12 1
578 330.86 humidity 60.0 14400 > th dose independent rect. 13 19
586 330.87 wind 1.0 43200 > th dose independent rect. 2 17
604 330.90 humidity 60.0 14400 < th dose independent rect. 13 19
621 330.93 humidity 60.0 14400 > th dose independent rect. 13 15
625 330.94 humidity 60.0 14400 > th dose independent rect. 13 9
638 330.95 humidity 80.0 14400 < th dose dependent rect. 16 6
658 330.98 humidity 70.0 14400 < th dose independent sin 13 NA
660 330.98 humidity 80.0 14400 > th dose independent rect. 19 8
661 330.98 humidity 60.0 14400 < th dose independent rect. 13 9
680 331.00 humidity 70.0 14400 < th dose dependent rect. 14 18
696 331.03 atmosphere 995.0 43200 < th dose dependent rect. 14 10
718 331.08 humidity 80.0 14400 < th dose dependent rect. 15 16
723 331.10 atmosphere 995.0 43200 > th dose independent rect. 24 23
731 331.11 wind 1.0 43200 < th dose dependent rect. 5 6
732 331.11 wind 1.0 43200 < th dose dependent rect. 4 10
801 331.24 humidity 60.0 14400 > th dose independent rect. 21 5
809 331.25 atmosphere 995.0 43200 > th dose independent rect. 2 23
822 331.27 radiation 40.0 14400 > th dose dependent rect. 14 2
852 331.31 humidity 60.0 14400 < th dose independent rect. 11 21
862 331.33 humidity 60.0 14400 < th dose independent sin 22 NA
866 331.33 humidity 80.0 14400 < th dose dependent sin 13 NA
893 331.36 wind 1.0 43200 < th dose independent rect. 12 22
898 331.37 atmosphere 995.0 43200 < th dose independent sin 17 NA
900 331.37 humidity 60.0 14400 < th dose independent rect. 11 11
946 331.41 humidity 80.0 14400 < th dose dependent rect. 19 3
953 331.43 humidity 60.0 14400 > th dose independent sin 21 NA
972 331.45 humidity 70.0 14400 > th dose independent sin 13 NA
984 331.46 radiation 20.0 14400 < th dose dependent rect. 15 1
987 331.47 humidity 60.0 14400 > th dose independent rect. 11 21
992 331.48 humidity 60.0 14400 > th dose independent rect. 13 23