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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0211500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0496) R2 : 0.889
β1 : 2.01 (0.261) R2dD : 0.0427 R2D : -0.457
β2 : 0.806 (0.125) R2dC : 0.0154 R2C : -0.366
β3 : -2.28 (0.192) R2dE : 0.0644 R2E : -0.517
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.22 (1.06) R2dD*E : 0.0244 R2D*E : -0.418
γ1 : 6.07 (0.119) R2dN8 : 1.48 R2N8 : 0.83
σ : 0.792
deviance : 289.17
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_____
C
peak time of C : 2.89
E
wheather : temperature
threshold : 26.2
memory length : 936
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 9.47
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.05 0.797 3.64 1.96 0.809 -2.24 0.634 5.75 6.04 2.7 26.3 934 9.57 --
305.86 0.815 3.79 1.07 0.566 -1.6 1.66 -- 5.61 0.631 26.6 919 11.8 --
289.17 0.792 3.63 2.01 0.806 -2.28 -- 6.22 6.07 2.89 26.2 936 9.47 --
312.36 0.823 3.76 0.785 0.762 -1.69 -- -- 5.73 2.86 25.71 911 10.3 --
314.89 0.826 3.68 1.92 -- -1.57 -- 5.47 5.93 -- 26.3 989 10.6 --
371.84 0.904 3.86 0.484 0.172 -- -1.17 -- 5.29 10 -- -- -- --
376.02 0.908 3.86 0.432 0.241 -- -- -- 5.28 7.49 -- -- -- --
320.96 0.834 3.82 0.868 -- -1.25 -- -- 5.52 -- 26.6 6322 9.25 --
325.69 0.841 3.75 -- 0.746 -1.62 -- -- 5.68 2.24 25.7 785 9.55 --
379.12 0.91 3.87 0.436 -- -- -- -- 5.29 -- -- -- -- --
380.94 0.913 3.87 -- 0.245 -- -- -- 5.24 7.37 -- -- -- --
333.3 0.85 3.8 -- -- -1.24 -- -- 5.61 -- 25.7 1694 7.61 --
384.13 0.915 3.88 -- -- -- -- -- 5.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 299.04 temperature 25 720 > th dose dependent sin 12 NA
5 301.67 temperature 25 720 > th dose dependent rect. 15 17
8 302.29 temperature 25 720 > th dose dependent rect. 15 14
28 304.53 wind 7 43200 > th dose dependent rect. 14 22
29 304.75 wind 9 43200 > th dose independent rect. 14 18
32 304.98 wind 7 43200 > th dose dependent rect. 11 22
33 305.02 wind 9 43200 < th dose independent rect. 14 19
34 305.03 wind 9 43200 > th dose dependent rect. 14 17
36 305.08 wind 7 43200 > th dose dependent sin 20 NA
37 305.08 wind 7 43200 > th dose dependent rect. 9 12
39 305.14 wind 7 43200 > th dose dependent rect. 9 16
58 305.45 wind 7 43200 > th dose dependent rect. 4 17
59 305.48 wind 7 43200 > th dose dependent rect. 16 23
60 305.51 wind 7 43200 > th dose dependent rect. 24 21
62 305.52 wind 9 43200 > th dose dependent rect. 14 11
63 305.52 wind 7 43200 > th dose dependent rect. 22 23
65 305.53 wind 7 43200 > th dose dependent rect. 9 23
69 305.58 wind 7 43200 > th dose dependent rect. 4 21
101 305.76 humidity 80 43200 > th dose dependent rect. 20 3
150 305.99 wind 7 43200 > th dose dependent no NA NA
184 306.33 wind 9 43200 < th dose independent rect. 16 23
185 306.34 wind 9 43200 < th dose independent rect. 8 13
196 306.48 humidity 80 43200 > th dose dependent rect. 21 1
199 306.49 temperature 25 720 < th dose independent rect. 17 5
200 306.50 wind 7 43200 > th dose dependent rect. 20 23
227 306.80 wind 9 43200 < th dose independent rect. 9 16
230 306.87 wind 9 43200 > th dose independent rect. 17 22
233 306.90 wind 9 43200 > th dose independent rect. 9 12
237 306.92 wind 7 43200 > th dose independent rect. 11 22
242 306.96 temperature 25 4320 > th dose dependent rect. 17 8
243 306.97 wind 9 43200 > th dose independent sin 15 NA
244 306.99 wind 7 43200 > th dose independent rect. 13 23
249 307.03 wind 9 43200 < th dose independent sin 20 NA
251 307.05 wind 7 43200 > th dose independent rect. 23 22
254 307.08 wind 9 43200 < th dose independent rect. 11 22
257 307.09 wind 9 43200 < th dose independent rect. 5 16
260 307.12 wind 7 43200 > th dose independent rect. 5 20
273 307.21 wind 9 43200 > th dose independent rect. 9 16
302 307.34 wind 7 43200 > th dose independent rect. 4 17
314 307.39 wind 9 43200 > th dose independent sin 19 NA
321 307.42 temperature 25 4320 > th dose dependent rect. 20 1
323 307.43 wind 7 43200 > th dose independent rect. 2 19
347 307.53 wind 9 43200 < th dose independent sin 15 NA
378 307.64 wind 7 43200 > th dose independent no NA NA
386 307.68 wind 7 43200 < th dose independent rect. 23 22
389 307.69 wind 7 43200 < th dose independent rect. 5 20
398 307.72 wind 9 43200 > th dose independent rect. 14 13
412 307.74 wind 7 43200 > th dose independent rect. 20 23
454 307.88 wind 9 43200 > th dose independent rect. 14 11
539 308.12 temperature 25 720 > th dose independent rect. 17 6
591 308.26 wind 7 43200 < th dose independent no NA NA
618 308.33 wind 9 43200 < th dose independent rect. 14 13
634 308.37 wind 7 43200 < th dose independent rect. 20 23
655 308.42 wind 9 43200 < th dose independent rect. 14 11
760 308.75 temperature 25 4320 > th dose dependent sin 12 NA
981 309.58 temperature 30 4320 < th dose independent rect. 13 1