FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0211400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.62 (0.0352) R2 : 0.792
β1 : 1.45 (0.182) R2dD : 0.0804 R2D : -0.0299
β2 : 3.04 (0.0871) R2dC : 0.536 R2C : 0.512
β3 : 1.75 (0.207) R2dE : 0.072 R2E : -0.0308
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.17 (0.0817) R2dN8 : 0.144 R2N8 : 0.193
σ : 0.639
deviance : 188.34
__
_____
C
peak time of C : 19.9
E
wheather : temperature
threshold : 14.61
memory length : 28398
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.59 0.638 5.49 1.43 2.97 -0.418 0.337 -5.82 -1.14 19.9 19.9 4375 -- --
196.41 0.653 5.66 1.38 2.85 1.04 1.11 -- -1.22 20.1 12.91 10050 -- --
184.9 0.633 5.49 1.4 2.97 -0.445 -- -5.91 -1.14 19.9 19.79 4424 -- --
188.34 0.639 5.62 1.45 3.04 1.75 -- -- -1.17 19.9 14.61 28398 -- --
663.46 1.21 5.57 0.954 -- 2.41 -- -1.07 -1.29 -- 20.08 4374 -- --
229.75 0.711 5.7 0.553 2.98 -- 0.133 -- -1.43 19.9 -- -- -- --
229.8 0.71 5.7 0.55 2.98 -- -- -- -1.42 19.9 -- -- -- --
664.07 1.21 5.58 0.929 -- 2.74 -- -- -1.3 -- 20.08 4374 -- --
217.67 0.687 5.69 -- 2.97 1.85 -- -- -1.41 20 15.41 3885 -- --
712.42 1.25 5.62 0.517 -- -- -- -- -1.46 -- -- -- -- --
237.76 0.721 5.71 -- 2.97 -- -- -- -1.49 19.9 -- -- -- --
684.92 1.22 5.61 -- -- 2.21 -- -- -1.42 -- 20.08 4374 -- --
719.48 1.25 5.63 -- -- -- -- -- -1.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.11 humidity 70 43200 < th dose independent rect. 6 2
2 176.48 humidity 90 14400 > th dose dependent rect. 5 1
3 177.02 humidity 70 43200 > th dose independent rect. 6 2
5 177.15 radiation 30 43200 < th dose dependent rect. 24 5
8 177.23 radiation 20 43200 < th dose independent rect. 17 14
12 177.47 wind 1 43200 < th dose independent rect. 2 1
14 177.64 radiation 30 43200 < th dose dependent rect. 2 3
16 177.84 radiation 20 43200 < th dose independent rect. 2 5
17 177.86 radiation 20 43200 < th dose independent rect. 6 1
18 177.87 radiation 20 43200 < th dose independent rect. 24 7
19 177.87 wind 1 43200 < th dose dependent rect. 2 1
31 178.05 radiation 20 43200 < th dose independent rect. 19 12
48 178.43 radiation 40 43200 < th dose independent rect. 15 17
53 178.64 humidity 60 43200 < th dose independent rect. 5 6
57 178.72 radiation 40 43200 < th dose independent rect. 15 3
58 178.73 radiation 40 43200 < th dose independent rect. 15 5
62 178.76 radiation 40 43200 < th dose independent rect. 15 1
65 178.79 radiation 40 43200 < th dose independent rect. 15 14
74 178.91 radiation 40 43200 < th dose independent rect. 15 10
85 179.05 humidity 60 43200 > th dose independent rect. 5 6
94 179.24 radiation 20 43200 < th dose independent rect. 17 1
99 179.30 radiation 40 43200 < th dose independent rect. 24 8
101 179.31 radiation 10 43200 < th dose dependent rect. 19 10
104 179.37 radiation 20 43200 < th dose independent rect. 17 3
105 179.37 humidity 70 43200 < th dose dependent rect. 7 1
106 179.38 radiation 40 43200 < th dose independent rect. 2 6
109 179.42 radiation 40 43200 < th dose independent rect. 6 2
122 179.58 humidity 60 43200 < th dose independent rect. 18 17
144 179.86 radiation 40 43200 < th dose independent rect. 17 15
146 179.89 radiation 1 43200 > th dose independent rect. 4 1
157 179.89 radiation 1 43200 > th dose dependent rect. 4 1
167 179.90 wind 1 43200 > th dose independent rect. 2 1
170 179.92 radiation 40 43200 < th dose independent rect. 19 13
172 179.93 radiation 20 43200 < th dose independent rect. 17 8
188 180.13 humidity 60 43200 > th dose independent rect. 18 17
198 180.19 humidity 60 43200 < th dose dependent rect. 10 1
199 180.21 humidity 50 43200 > th dose independent rect. 9 2
200 180.26 humidity 50 43200 < th dose independent rect. 10 1
212 180.40 humidity 60 43200 < th dose independent rect. 22 13
239 180.58 temperature 20 30 > th dose independent rect. 20 17
253 180.72 humidity 60 43200 > th dose independent rect. 22 13
261 180.80 radiation 40 43200 > th dose dependent rect. 15 17
278 180.91 radiation 1 43200 < th dose independent rect. 8 1
280 180.95 radiation 1 43200 < th dose dependent rect. 8 1
288 180.99 temperature 20 30 > th dose independent rect. 3 23
289 181.01 radiation 1 43200 > th dose independent rect. 8 1
300 181.10 temperature 15 14400 > th dose independent rect. 7 1
306 181.16 radiation 1 43200 < th dose dependent rect. 7 4
317 181.33 radiation 20 43200 > th dose dependent rect. 17 14
319 181.36 radiation 1 43200 > th dose dependent rect. 18 1
334 181.44 wind 3 43200 > th dose independent rect. 15 1
335 181.46 radiation 1 43200 < th dose independent rect. 8 4
338 181.47 temperature 20 43200 < th dose dependent rect. 2 1
341 181.52 radiation 1 43200 > th dose independent rect. 8 4
353 181.63 radiation 1 43200 < th dose independent rect. 10 1
356 181.63 temperature 20 4320 < th dose dependent rect. 2 1
357 181.63 radiation 1 43200 < th dose dependent rect. 10 1
360 181.65 temperature 20 30 > th dose independent rect. 7 23
363 181.68 radiation 40 43200 < th dose dependent rect. 18 3
374 181.73 temperature 20 43200 < th dose dependent rect. 22 5
376 181.75 radiation 20 43200 > th dose dependent rect. 6 1
396 181.79 temperature 20 43200 < th dose dependent rect. 22 3
399 181.80 temperature 20 43200 < th dose independent rect. 7 1
400 181.80 radiation 1 43200 > th dose independent rect. 10 1
428 181.85 wind 3 43200 < th dose independent rect. 15 1
445 181.89 humidity 90 14400 > th dose dependent rect. 3 6
447 181.89 humidity 60 43200 < th dose dependent rect. 22 14
460 181.92 radiation 10 43200 < th dose dependent rect. 18 7
487 182.03 humidity 60 43200 < th dose dependent rect. 17 19
493 182.06 humidity 90 14400 > th dose dependent rect. 1 9
514 182.11 humidity 90 14400 > th dose dependent rect. 24 11
560 182.23 temperature 20 43200 < th dose dependent sin 10 NA
609 182.32 humidity 50 43200 > th dose independent rect. 16 21
719 182.55 humidity 70 43200 < th dose independent rect. 20 1
744 182.61 humidity 90 14400 > th dose independent rect. 1 1
766 182.64 temperature 20 43200 < th dose independent rect. 14 5
777 182.65 humidity 90 14400 > th dose independent rect. 5 1
785 182.66 temperature 20 43200 < th dose independent rect. 7 14
788 182.67 temperature 20 43200 < th dose independent rect. 18 1
813 182.70 humidity 70 43200 > th dose independent rect. 20 1
823 182.71 humidity 50 43200 > th dose independent sin 6 NA
859 182.76 temperature 20 43200 > th dose independent rect. 7 12
861 182.76 humidity 50 43200 < th dose independent rect. 16 22
880 182.79 temperature 20 43200 > th dose independent rect. 7 9
896 182.81 temperature 20 4320 < th dose dependent rect. 23 5
908 182.82 temperature 20 43200 < th dose dependent rect. 6 23
913 182.83 temperature 20 43200 < th dose dependent no NA NA
933 182.86 temperature 20 43200 > th dose independent rect. 13 6
954 182.89 temperature 20 43200 < th dose independent rect. 6 10
966 182.91 temperature 20 43200 < th dose dependent rect. 6 1
967 182.91 humidity 80 14400 > th dose dependent rect. 24 2