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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0210000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.72 (0.0327) R2 : 0.579
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.29 (0.0991) R2dC : 0.224 R2C : 0.419
β3 : 1.49 (0.134) R2dE : 0.163 R2E : 0.343
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.175 (0.0703) R2dN8 : 0.00735 R2N8 : -0.00608
σ : 0.612
deviance : 172.64
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_____
C
peak time of C : 19.7
E
wheather : temperature
threshold : 23.27
memory length : 622
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.3 0.613 3.75 -0.371 1.28 1.59 0.845 -1.21 -0.257 19.7 23.16 615 -- --
170.71 0.609 3.74 -0.158 1.33 1.48 0.678 -- -0.222 19.7 22.26 610 -- --
171.95 0.611 3.75 -0.255 1.28 1.57 -- -0.488 -0.242 19.7 23.12 616 -- --
171.92 0.611 3.73 -0.167 1.29 1.52 -- -- -0.194 19.7 23.15 616 -- --
228.73 0.704 3.71 -0.394 -- 2.57 -- -1.29 -0.169 -- 24.55 612 -- --
213.52 0.685 3.7 0.203 1.89 -- 1.11 -- 0.0227 19.6 -- -- -- --
216.98 0.69 3.69 0.177 1.89 -- -- -- 0.0245 19.6 -- -- -- --
229.36 0.705 3.7 -0.339 -- 2.51 -- -- -0.237 -- 24.4 604 -- --
172.64 0.612 3.72 -- 1.29 1.49 -- -- -0.175 19.7 23.27 622 -- --
409.36 0.945 3.65 0.149 -- -- -- -- -0.00466 -- -- -- -- --
217.8 0.69 3.7 -- 1.89 -- -- -- 0.00484 19.6 -- -- -- --
232.3 0.71 3.69 -- -- 2.45 -- -- -0.196 -- 24.43 593 -- --
409.94 0.945 3.65 -- -- -- -- -- -0.0212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.89 temperature 30 720 > th dose independent rect. 14 4
2 166.06 temperature 30 720 < th dose independent rect. 14 7
3 166.07 temperature 30 720 < th dose independent rect. 15 15
4 166.15 temperature 30 720 > th dose independent rect. 14 19
8 166.52 temperature 10 720 > th dose dependent rect. 6 18
27 167.54 temperature 30 720 < th dose independent rect. 9 12
31 167.88 temperature 30 720 < th dose independent rect. 9 21
32 167.88 temperature 10 720 > th dose dependent rect. 6 20
35 168.00 temperature 20 270 > th dose dependent rect. 12 21
41 168.19 temperature 25 720 > th dose dependent rect. 14 4
45 168.34 temperature 20 270 > th dose dependent rect. 14 18
46 168.36 temperature 10 720 > th dose dependent rect. 11 7
57 168.64 temperature 20 270 > th dose dependent rect. 14 14
63 168.78 temperature 20 270 > th dose dependent rect. 14 12
93 169.10 temperature 30 720 > th dose independent sin 16 NA
101 169.27 temperature 30 720 < th dose independent rect. 2 19
141 169.49 temperature 25 720 > th dose dependent rect. 12 7
145 169.53 temperature 30 720 < th dose independent sin 17 NA
158 169.68 temperature 30 720 < th dose independent rect. 23 22
168 169.76 temperature 20 720 > th dose dependent sin 20 NA
223 170.20 temperature 25 720 > th dose dependent rect. 14 23
227 170.23 temperature 30 720 < th dose independent rect. 9 16
236 170.33 temperature 20 270 > th dose dependent sin 16 NA
283 170.50 temperature 10 720 > th dose dependent rect. 6 13
285 170.51 temperature 30 720 < th dose independent rect. 13 23
339 170.84 atmosphere 1005 720 < th dose independent rect. 17 1
386 171.18 temperature 25 720 > th dose dependent rect. 11 15
394 171.23 temperature 25 720 > th dose dependent rect. 21 23
494 171.48 temperature 25 720 > th dose dependent no NA NA
541 171.58 temperature 10 720 > th dose dependent rect. 14 10
547 171.60 temperature 30 720 < th dose independent rect. 2 23
650 172.00 temperature 30 720 > th dose independent no NA NA
651 172.00 temperature 30 720 > th dose independent rect. 8 11
765 172.06 temperature 30 720 < th dose independent no NA NA
784 172.12 temperature 10 720 > th dose dependent rect. 21 21
972 172.98 temperature 30 720 < th dose independent rect. 17 23
986 173.03 temperature 30 720 < th dose independent rect. 4 23