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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0209100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.022) R2 : 0.38
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.672 (0.0566) R2dC : 0.193 R2C : 0.145
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.535 (0.0462) R2dN8 : 0.235 R2N8 : 0.187
σ : 0.414
deviance : 78.41
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.38 0.377 10.1 0.865 0.684 0.107 0.0786 -1.45 -0.38 19.5 92.66 4421 -- --
65.21 0.376 10.1 0.703 0.674 0.456 0.104 -- -0.479 19.4 95.66 5863 -- --
64.35 0.374 10.1 0.857 0.683 0.124 -- -1.41 -0.382 19.5 92.99 4420 -- --
64.73 0.375 10.1 0.728 0.698 0.518 -- -- -0.397 19.5 95.48 5885 -- --
89.17 0.44 10.1 0.927 -- 0.00988 -- -1.62 -0.401 -- 92.54 4375 -- --
68.3 0.387 10.1 0.621 0.677 -- 0.185 -- -0.466 19.5 -- -- -- --
68.4 0.387 10.1 0.616 0.677 -- -- -- -0.466 19.5 -- -- -- --
89.52 0.441 10 0.708 -- 0.525 -- -- -0.395 -- 95.64 5836 -- --
76.45 0.407 10.1 -- 0.685 0.319 -- -- -0.465 19.6 93.44 5814 -- --
92.94 0.45 10.1 0.606 -- -- -- -- -0.477 -- -- -- -- --
78.41 0.414 10.1 -- 0.672 -- -- -- -0.535 19.6 -- -- -- --
98.05 0.461 10.1 -- -- -0.359 -- -- -0.596 -- 95.3 36742 -- --
102.63 0.473 10.1 -- -- -- -- -- -0.544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.72 temperature 25.0 30 > th dose independent rect. 18 17
2 61.93 temperature 25.0 30 > th dose independent rect. 18 2
4 62.11 humidity 90.0 4320 > th dose dependent rect. 2 1
5 62.22 temperature 25.0 30 > th dose independent rect. 18 14
8 62.83 temperature 25.0 30 > th dose independent rect. 18 5
9 62.92 humidity 50.0 270 > th dose independent rect. 14 9
11 62.98 temperature 25.0 30 > th dose dependent rect. 18 2
13 63.07 humidity 70.0 90 > th dose independent rect. 18 1
14 63.08 humidity 70.0 30 > th dose independent rect. 15 9
16 63.09 humidity 70.0 10 > th dose independent rect. 17 7
21 63.20 temperature 30.0 90 < th dose independent rect. 18 1
27 63.27 temperature 20.0 10 > th dose dependent rect. 7 1
35 63.46 humidity 60.0 90 > th dose dependent rect. 18 1
38 63.50 temperature 25.0 30 > th dose dependent rect. 18 14
43 63.60 temperature 25.0 30 > th dose independent rect. 14 21
44 63.62 humidity 60.0 90 > th dose independent rect. 17 18
46 63.63 humidity 60.0 270 > th dose independent rect. 15 17
49 63.71 humidity 90.0 10 < th dose independent rect. 7 1
50 63.71 humidity 70.0 10 > th dose independent rect. 18 2
53 63.71 humidity 50.0 270 > th dose independent rect. 4 15
56 63.72 radiation 40.0 270 < th dose independent rect. 12 11
58 63.74 temperature 25.0 10 > th dose independent rect. 7 1
60 63.74 temperature 20.0 270 > th dose independent rect. 3 20
61 63.74 humidity 50.0 270 > th dose independent rect. 2 21
67 63.79 temperature 20.0 90 > th dose independent rect. 6 17
75 63.88 temperature 25.0 30 > th dose independent rect. 18 22
77 63.88 radiation 1.0 14400 < th dose dependent rect. 23 1
79 63.89 humidity 70.0 30 > th dose independent rect. 6 18
82 63.90 radiation 10.0 14400 < th dose dependent rect. 19 6
88 63.94 radiation 1.0 90 < th dose independent rect. 17 2
95 63.98 humidity 50.0 270 > th dose independent rect. 3 18
98 63.99 temperature 30.0 90 < th dose independent rect. 23 18
99 63.99 temperature 30.0 90 < th dose independent rect. 19 22
102 64.00 wind 7.0 90 < th dose independent rect. 5 18
104 64.00 temperature 30.0 10 < th dose dependent rect. 18 1
105 64.00 radiation 1.0 30 < th dose dependent rect. 17 7
106 64.00 temperature 10.0 270 > th dose dependent rect. 18 14
111 64.02 radiation 20.0 90 < th dose dependent rect. 14 10
114 64.03 radiation 1.0 90 < th dose dependent rect. 17 2
116 64.04 humidity 90.0 4320 > th dose independent rect. 2 2
118 64.05 temperature 30.0 90 < th dose independent rect. 17 7
122 64.06 temperature 20.0 30 > th dose dependent rect. 18 17
123 64.07 humidity 90.0 90 < th dose independent rect. 18 1
127 64.07 temperature 25.0 30 > th dose dependent rect. 18 5
131 64.08 humidity 90.0 4320 > th dose dependent rect. 2 8
136 64.12 radiation 40.0 270 < th dose independent rect. 3 20
139 64.14 temperature 30.0 10 < th dose independent rect. 17 7
154 64.17 temperature 30.0 90 < th dose independent rect. 17 15
157 64.17 radiation 1.0 30 < th dose dependent rect. 6 18
159 64.18 temperature 10.0 270 > th dose dependent rect. 3 6
163 64.19 wind 7.0 90 < th dose independent rect. 23 23
165 64.19 temperature 10.0 90 > th dose dependent rect. 6 17
170 64.20 temperature 20.0 10 > th dose dependent rect. 22 13
173 64.21 radiation 10.0 90 < th dose independent rect. 14 10
183 64.23 humidity 70.0 30 > th dose independent rect. 14 6
184 64.23 radiation 1.0 30 < th dose independent rect. 17 7
186 64.23 wind 9.0 90 < th dose dependent rect. 5 18
188 64.24 humidity 70.0 10 > th dose dependent rect. 18 1
190 64.25 temperature 10.0 1440 > th dose independent rect. 18 7
193 64.25 humidity 50.0 1440 > th dose independent rect. 18 7
195 64.25 radiation 20.0 1440 < th dose independent rect. 18 7
208 64.25 temperature 10.0 1440 > th dose independent rect. 1 17
212 64.25 temperature 30.0 270 < th dose dependent rect. 23 4
217 64.25 radiation 1.0 30 < th dose dependent rect. 11 13
228 64.26 radiation 20.0 90 < th dose dependent rect. 6 18
233 64.27 radiation 1.0 30 < th dose dependent rect. 13 11
239 64.29 temperature 30.0 270 < th dose independent rect. 15 17
240 64.29 humidity 70.0 270 > th dose independent rect. 3 20
245 64.30 temperature 25.0 30 > th dose independent rect. 12 23
246 64.30 humidity 50.0 1440 > th dose dependent rect. 2 1
249 64.30 humidity 70.0 1440 > th dose dependent rect. 24 13
265 64.33 temperature 30.0 10 < th dose independent rect. 18 1
278 64.34 wind 5.0 90 < th dose independent rect. 18 1
287 64.35 wind 7.0 10 < th dose independent rect. 6 14
293 64.36 temperature 25.0 30 > th dose independent rect. 15 17
295 64.36 wind 7.0 90 < th dose dependent rect. 18 1
296 64.36 humidity 50.0 10 > th dose dependent rect. 17 7
303 64.37 humidity 90.0 30 < th dose independent rect. 4 19
306 64.37 wind 9.0 90 < th dose dependent rect. 13 10
314 64.38 temperature 15.0 270 > th dose dependent rect. 4 4
317 64.39 atmosphere 1005.0 10 < th dose independent rect. 18 2
327 64.40 humidity 80.0 1440 > th dose independent rect. 22 16
335 64.40 temperature 10.0 10 > th dose dependent rect. 6 18
336 64.40 humidity 50.0 90 > th dose dependent rect. 6 18
349 64.42 humidity 50.0 90 > th dose independent rect. 6 17
363 64.42 wind 9.0 90 < th dose dependent rect. 6 14
364 64.42 humidity 50.0 270 > th dose dependent rect. 3 20
366 64.43 humidity 90.0 4320 > th dose independent rect. 2 8
367 64.43 wind 5.0 90 < th dose independent rect. 5 15
375 64.44 humidity 80.0 270 < th dose independent rect. 22 19
380 64.44 radiation 10.0 90 < th dose dependent rect. 23 7
384 64.45 humidity 80.0 1440 < th dose independent rect. 22 15
387 64.45 precipitation 0.1 90 < th dose independent rect. 24 17
391 64.45 humidity 50.0 10 > th dose dependent rect. 7 17
392 64.45 precipitation 0.1 90 < th dose dependent rect. 24 17
395 64.46 humidity 90.0 90 < th dose independent rect. 22 1
396 64.46 temperature 25.0 30 > th dose independent rect. 22 13
397 64.46 radiation 1.0 30 < th dose independent rect. 6 18
410 64.48 wind 1.0 10 > th dose dependent rect. 18 1
419 64.49 wind 7.0 90 < th dose independent rect. 24 17
425 64.50 radiation 10.0 90 < th dose independent rect. 23 7
430 64.50 atmosphere 1005.0 10 > th dose dependent rect. 18 1
439 64.50 wind 9.0 10 < th dose dependent rect. 6 14
441 64.50 temperature 10.0 270 > th dose dependent rect. 3 20
443 64.51 atmosphere 1015.0 1440 < th dose independent rect. 1 6
445 64.51 humidity 70.0 30 > th dose independent rect. 10 14
480 64.54 atmosphere 1000.0 10 > th dose independent rect. 19 23
483 64.55 wind 5.0 30 > th dose independent rect. 18 1
487 64.55 temperature 20.0 90 > th dose independent rect. 6 14
504 64.56 radiation 20.0 90 < th dose dependent rect. 11 13
507 64.57 humidity 90.0 90 < th dose independent rect. 4 4
508 64.57 temperature 10.0 90 > th dose independent rect. 17 7
512 64.57 radiation 1.0 30 < th dose independent rect. 11 13
517 64.57 temperature 10.0 90 > th dose independent rect. 24 17
518 64.57 atmosphere 1015.0 90 < th dose independent rect. 24 17
524 64.57 temperature 30.0 10 < th dose dependent rect. 24 6
525 64.57 humidity 90.0 4320 > th dose dependent rect. 20 9
533 64.58 wind 9.0 90 < th dose independent rect. 17 7
536 64.58 wind 7.0 90 < th dose independent rect. 1 22
543 64.59 humidity 90.0 90 < th dose independent rect. 17 6
548 64.59 wind 1.0 270 > th dose independent rect. 24 15
551 64.59 temperature 25.0 270 > th dose dependent rect. 2 6
560 64.60 wind 3.0 4320 > th dose dependent rect. 20 1
578 64.62 wind 7.0 10 < th dose independent rect. 6 17
583 64.62 atmosphere 995.0 270 > th dose dependent rect. 23 4
593 64.63 wind 5.0 90 < th dose independent rect. 13 10
606 64.63 temperature 30.0 10 < th dose dependent rect. 24 17
612 64.64 humidity 80.0 30 < th dose dependent rect. 18 1
619 64.64 humidity 50.0 90 > th dose dependent rect. 6 14
621 64.65 atmosphere 995.0 90 > th dose independent rect. 17 7
634 64.66 atmosphere 1005.0 90 < th dose independent rect. 13 7
636 64.66 humidity 70.0 270 > th dose independent rect. 3 17
645 64.67 wind 1.0 90 > th dose independent rect. 17 7
647 64.67 temperature 15.0 270 > th dose independent rect. 3 8
651 64.67 temperature 15.0 270 > th dose independent rect. 4 16
654 64.67 temperature 15.0 90 > th dose independent rect. 23 23
655 64.67 humidity 90.0 4320 > th dose dependent sin 7 NA
681 64.68 radiation 40.0 270 < th dose dependent rect. 3 20
682 64.69 humidity 70.0 30 > th dose independent sin 17 NA
692 64.69 humidity 50.0 270 > th dose dependent rect. 4 15
707 64.71 humidity 90.0 30 < th dose independent rect. 4 7
733 64.72 temperature 15.0 90 > th dose dependent rect. 22 1
734 64.72 radiation 1.0 14400 < th dose dependent rect. 19 2
771 64.75 humidity 70.0 30 > th dose independent rect. 6 14
786 64.76 humidity 90.0 10 < th dose independent rect. 18 1
787 64.76 radiation 40.0 270 < th dose independent rect. 3 6
806 64.77 humidity 80.0 1440 > th dose independent sin 6 NA
808 64.77 temperature 30.0 90 < th dose independent rect. 23 14
821 64.77 temperature 25.0 10 > th dose dependent rect. 22 10
853 64.79 humidity 80.0 1440 < th dose independent sin 6 NA
866 64.79 humidity 50.0 30 > th dose dependent rect. 15 9
872 64.80 temperature 15.0 90 > th dose independent rect. 5 6
884 64.80 humidity 70.0 1440 > th dose dependent sin 5 NA
914 64.81 radiation 1.0 1440 < th dose dependent rect. 19 6
927 64.82 humidity 70.0 90 < th dose independent rect. 11 9
942 64.82 humidity 50.0 270 > th dose independent rect. 12 23
959 64.83 atmosphere 995.0 90 > th dose independent rect. 24 17
963 64.83 atmosphere 1015.0 10 < th dose dependent rect. 18 1
976 64.84 wind 1.0 10 > th dose independent rect. 18 1
978 64.84 temperature 10.0 10 > th dose independent rect. 18 1
981 64.84 atmosphere 995.0 10 > th dose independent rect. 18 1
984 64.84 radiation 20.0 10 < th dose independent rect. 18 1
987 64.84 precipitation 0.1 10 < th dose independent rect. 18 1
997 64.84 temperature 10.0 10 > th dose independent rect. 19 23
998 64.84 wind 9.0 4320 < th dose dependent rect. 20 1
999 64.84 precipitation 0.1 10 < th dose dependent rect. 18 1