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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0207000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0154) R2 : 0.000566
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0164 (0.0323) R2dN8 : 0.00073 R2N8 : 0.000566
σ : 0.289
deviance : 38.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.97 0.274 2.58 -1.12 0.152 -38.6 -0.235 -82.7 -0.000243 10.8 15.06 1461 -- --
34.07 0.274 3.02 -0.195 0.157 0.656 -0.274 -- 0.000995 10.8 15.92 512 -- --
34.15 0.272 2.56 -1.18 0.155 -38.3 -- -81.9 -0.00364 10.9 15.2 1504 -- --
34.24 0.273 3.02 -0.196 0.155 0.557 -- -- 0.00113 10.7 16.8 214 -- --
35.56 0.278 2.56 -1.19 -- -38.4 -- -82.1 -0.00454 -- 15.2 1507 -- --
35.07 0.278 3.02 -0.236 0.152 -- -0.237 -- -0.00956 10.8 -- -- -- --
35.31 0.278 3.02 -0.246 0.153 -- -- -- -0.0103 10.8 -- -- -- --
35.66 0.278 3.02 -0.197 -- 0.549 -- -- 0.00261 -- 17.37 341 -- --
34.69 0.274 3.01 -- 0.148 0.596 -- -- 0.0373 10.8 15.8 6353 -- --
36.76 0.283 3.03 -0.249 -- -- -- -- -0.0112 -- -- -- -- --
36.9 0.284 3.02 -- 0.155 -- -- -- 0.0171 10.9 -- -- -- --
36.03 0.28 3.02 -- -- 0.616 -- -- 0.0378 -- 15.76 6482 -- --
38.4 0.289 3.02 -- -- -- -- -- 0.0164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.84 wind 1.0 30 < th dose dependent rect. 11 1
4 32.72 wind 1.0 270 < th dose dependent rect. 8 1
5 32.73 wind 1.0 30 < th dose independent rect. 11 1
7 32.83 humidity 60.0 30 > th dose independent rect. 11 1
11 32.98 temperature 15.0 10 > th dose independent rect. 12 23
14 33.04 radiation 20.0 90 < th dose independent rect. 10 1
15 33.08 atmosphere 1010.0 30 < th dose independent rect. 12 23
19 33.14 radiation 20.0 10 < th dose independent rect. 11 1
20 33.15 atmosphere 1000.0 30 > th dose independent rect. 12 23
24 33.18 radiation 40.0 90 < th dose dependent rect. 11 1
34 33.28 wind 1.0 270 < th dose independent rect. 8 1
39 33.30 atmosphere 1015.0 30 < th dose dependent rect. 12 23
50 33.39 temperature 10.0 30 > th dose dependent rect. 12 23
53 33.42 radiation 10.0 10 > th dose independent rect. 11 1
64 33.45 radiation 20.0 270 < th dose dependent rect. 8 3
73 33.48 temperature 30.0 10 < th dose independent rect. 11 1
77 33.48 temperature 15.0 720 > th dose independent rect. 21 3
82 33.49 humidity 50.0 90 > th dose dependent rect. 11 1
85 33.50 temperature 10.0 1440 > th dose independent rect. 12 1
90 33.50 atmosphere 995.0 1440 > th dose independent rect. 12 1
92 33.50 temperature 10.0 1440 > th dose independent rect. 13 23
96 33.51 temperature 10.0 30 > th dose independent rect. 11 1
98 33.51 atmosphere 995.0 30 > th dose independent rect. 11 1
99 33.51 atmosphere 1015.0 30 < th dose independent rect. 11 1
101 33.51 precipitation 0.1 30 < th dose independent rect. 11 1
104 33.51 humidity 60.0 30 > th dose independent rect. 12 23
105 33.51 precipitation 0.1 30 < th dose dependent rect. 11 1
106 33.51 wind 1.0 270 < th dose dependent rect. 8 4
107 33.52 wind 9.0 30 < th dose independent rect. 11 1
110 33.53 wind 1.0 10 > th dose independent rect. 11 1
117 33.53 temperature 15.0 270 > th dose independent rect. 21 10
121 33.53 precipitation 0.1 30 < th dose independent rect. 12 23
123 33.53 precipitation 0.1 30 < th dose dependent rect. 12 23
124 33.54 wind 7.0 1440 > th dose independent rect. 7 1
138 33.56 wind 9.0 30 < th dose independent rect. 12 23
139 33.56 temperature 30.0 30 < th dose independent rect. 12 23
148 33.57 radiation 40.0 30 < th dose independent rect. 13 22
154 33.58 temperature 15.0 90 > th dose independent rect. 12 13
155 33.58 temperature 15.0 270 > th dose independent rect. 10 22
159 33.59 temperature 15.0 720 > th dose independent rect. 4 20
160 33.59 temperature 15.0 10 > th dose independent rect. 21 23
204 33.66 temperature 15.0 270 > th dose independent rect. 12 11
205 33.66 temperature 15.0 270 > th dose independent rect. 12 19
212 33.67 precipitation 0.1 1440 > th dose independent rect. 10 3
215 33.67 precipitation 0.1 1440 > th dose dependent rect. 10 3
217 33.67 atmosphere 995.0 10 > th dose dependent rect. 18 10
240 33.69 wind 7.0 1440 > th dose dependent rect. 7 1
266 33.72 radiation 1.0 30 > th dose independent rect. 12 23
267 33.72 atmosphere 1015.0 30 < th dose dependent rect. 11 1
270 33.72 wind 9.0 1440 > th dose dependent rect. 22 12
273 33.73 wind 9.0 1440 > th dose independent rect. 1 9
276 33.73 humidity 60.0 90 > th dose independent rect. 19 17
303 33.75 wind 1.0 10 > th dose independent rect. 12 23
305 33.75 temperature 15.0 90 > th dose independent rect. 3 23
313 33.76 temperature 15.0 720 > th dose independent rect. 12 3
315 33.76 atmosphere 1000.0 270 > th dose independent rect. 21 11
318 33.76 wind 9.0 30 < th dose dependent rect. 11 1
332 33.77 wind 9.0 1440 > th dose dependent rect. 1 9
341 33.78 atmosphere 1000.0 720 > th dose independent rect. 3 6
342 33.78 atmosphere 1000.0 270 > th dose independent rect. 3 13
352 33.78 radiation 40.0 10 < th dose dependent rect. 13 22
356 33.79 atmosphere 1000.0 90 > th dose independent rect. 3 15
361 33.79 temperature 10.0 10 > th dose dependent rect. 11 1
362 33.80 temperature 15.0 720 > th dose independent rect. 12 6
363 33.80 temperature 15.0 720 > th dose independent rect. 6 9
366 33.80 wind 7.0 1440 > th dose dependent rect. 9 1
368 33.80 temperature 10.0 720 > th dose dependent rect. 21 3
372 33.81 precipitation 0.1 1440 > th dose independent rect. 12 1
379 33.81 wind 7.0 1440 > th dose independent rect. 1 7
380 33.81 temperature 15.0 1440 > th dose independent rect. 19 9
381 33.81 temperature 10.0 1440 > th dose independent rect. 19 18
384 33.81 atmosphere 995.0 1440 > th dose independent rect. 19 18
388 33.81 precipitation 0.1 1440 > th dose dependent rect. 12 1
397 33.82 wind 9.0 1440 > th dose independent rect. 9 1
398 33.82 temperature 15.0 1440 > th dose independent rect. 9 1
402 33.82 radiation 20.0 4320 < th dose independent rect. 4 2
410 33.82 atmosphere 995.0 90 > th dose independent rect. 12 7
412 33.82 atmosphere 1010.0 90 < th dose independent rect. 12 13
430 33.83 temperature 30.0 90 < th dose independent rect. 12 6
440 33.84 precipitation 0.1 1440 < th dose independent rect. 9 1
445 33.84 humidity 50.0 10 > th dose independent rect. 20 16
447 33.84 temperature 15.0 1440 > th dose independent rect. 10 18
451 33.84 humidity 60.0 270 > th dose independent rect. 16 20
457 33.84 precipitation 0.1 1440 < th dose dependent rect. 9 1
461 33.84 humidity 90.0 1440 > th dose dependent rect. 10 4
476 33.85 humidity 60.0 90 > th dose independent rect. 12 6
478 33.85 wind 9.0 90 < th dose independent rect. 12 7
479 33.85 temperature 15.0 90 > th dose independent rect. 3 15
481 33.85 precipitation 0.1 90 < th dose independent rect. 19 17
491 33.85 atmosphere 1015.0 90 < th dose dependent rect. 12 13
492 33.85 precipitation 0.1 90 < th dose dependent rect. 19 17
503 33.86 radiation 40.0 90 < th dose independent rect. 12 6
504 33.86 temperature 10.0 90 > th dose independent rect. 12 7
506 33.86 atmosphere 1010.0 90 < th dose independent rect. 12 7
509 33.86 temperature 15.0 720 > th dose independent rect. 10 14
511 33.86 temperature 10.0 90 > th dose independent rect. 19 17
512 33.86 atmosphere 995.0 90 > th dose independent rect. 19 17
514 33.86 temperature 15.0 1440 > th dose independent rect. 6 22
528 33.87 temperature 15.0 1440 > th dose independent rect. 10 3
530 33.87 wind 1.0 90 > th dose independent rect. 12 7
534 33.87 precipitation 0.1 90 < th dose independent rect. 12 7
539 33.87 atmosphere 1000.0 270 > th dose independent rect. 12 19
541 33.87 temperature 15.0 1440 > th dose independent rect. 8 20
549 33.87 precipitation 0.1 90 < th dose dependent rect. 12 7
560 33.88 temperature 15.0 1440 > th dose independent rect. 21 7
562 33.88 atmosphere 1000.0 30 > th dose independent rect. 3 8
581 33.88 atmosphere 1000.0 270 > th dose independent rect. 14 23
598 33.89 atmosphere 1010.0 720 < th dose independent rect. 12 3
605 33.89 atmosphere 1015.0 720 < th dose independent rect. 3 6
614 33.89 atmosphere 1010.0 30 < th dose independent rect. 12 19
617 33.89 wind 3.0 4320 > th dose dependent rect. 24 1
622 33.89 humidity 50.0 30 > th dose dependent rect. 12 6
638 33.90 temperature 15.0 1440 > th dose independent rect. 10 6
644 33.90 atmosphere 1015.0 1440 < th dose independent rect. 2 10
645 33.90 atmosphere 1000.0 270 > th dose independent rect. 1 11
649 33.90 wind 9.0 90 < th dose independent rect. 19 17
650 33.90 temperature 30.0 90 < th dose independent rect. 18 18
655 33.90 atmosphere 1010.0 30 < th dose independent rect. 21 23
688 33.91 temperature 15.0 30 > th dose independent rect. 23 12
689 33.91 atmosphere 1010.0 30 < th dose independent rect. 23 12
706 33.91 temperature 10.0 720 > th dose dependent rect. 23 1
712 33.91 atmosphere 1015.0 1440 > th dose dependent rect. 2 9
719 33.92 temperature 15.0 720 > th dose independent rect. 23 1
720 33.92 temperature 25.0 270 < th dose independent rect. 8 1
721 33.92 humidity 80.0 30 < th dose independent rect. 11 1
726 33.92 atmosphere 1000.0 720 > th dose independent rect. 21 3
729 33.92 humidity 90.0 1440 > th dose independent rect. 10 4
730 33.92 temperature 15.0 1440 > th dose independent rect. 8 5
731 33.92 humidity 60.0 270 > th dose independent rect. 7 5
732 33.92 radiation 1.0 1440 > th dose independent rect. 8 5
741 33.92 atmosphere 1015.0 1440 > th dose independent rect. 2 9
749 33.92 temperature 15.0 270 > th dose independent rect. 3 13
763 33.92 temperature 15.0 1440 > th dose independent rect. 10 23
785 33.92 humidity 50.0 30 > th dose dependent rect. 12 23
786 33.93 radiation 10.0 4320 > th dose independent rect. 5 1
816 33.93 atmosphere 1000.0 10 > th dose independent rect. 24 11
823 33.93 temperature 15.0 1440 > th dose independent rect. 12 16
832 33.93 temperature 15.0 1440 > th dose independent rect. 10 21
844 33.93 radiation 10.0 4320 > th dose dependent rect. 5 1
853 33.93 atmosphere 1015.0 90 < th dose dependent rect. 12 7
865 33.93 radiation 40.0 270 < th dose dependent rect. 17 19
891 33.94 temperature 15.0 30 > th dose independent rect. 21 14
894 33.94 radiation 40.0 90 < th dose independent rect. 19 17
897 33.94 temperature 30.0 10 < th dose independent rect. 18 19
898 33.94 temperature 15.0 1440 > th dose independent rect. 19 21
929 33.95 temperature 15.0 1440 > th dose independent sin 13 NA
960 33.95 temperature 15.0 90 > th dose independent rect. 23 10
968 33.95 radiation 20.0 270 < th dose independent rect. 17 19
980 33.95 temperature 15.0 1440 > th dose independent rect. 8 23
985 33.95 wind 5.0 30 < th dose dependent rect. 20 1
987 33.95 temperature 30.0 90 < th dose dependent rect. 9 3
996 33.96 wind 5.0 30 < th dose independent rect. 20 1