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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0206800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor, MADS-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.022) R2 : 0.007
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.083 (0.0463) R2dN8 : 0.00904 R2N8 : 0.007
σ : 0.414
deviance : 78.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.67 0.351 2.93 -0.0521 0.0652 3.58 -0.0138 -10.4 0.104 3.61 0.8001 97 7.77 2.4
58.94 0.358 2.93 -0.0182 0.0736 4.02 0.17 -- 0.103 1.16 0.7826 97 7.8 2.12
55.67 0.348 2.93 -0.0518 0.0651 3.58 -- -10.4 0.104 3.48 0.8 97 7.77 2.4
59 0.358 2.93 -0.0451 0.0667 4.03 -- -- 0.103 2.77 0.7237 97 7.8 2.27
55.9 0.348 2.93 -0.0502 -- 3.54 -- -10.5 0.107 -- 0.8001 97 7.75 2.38
78.06 0.414 2.93 -0.0328 0.086 -- -0.319 -- 0.0767 7.29 -- -- -- --
78.31 0.414 2.93 -0.0405 0.0892 -- -- -- 0.0769 6.39 -- -- -- --
59.27 0.359 2.92 -0.0429 -- 4.01 -- -- 0.105 -- 0.7202 97 7.8 2.24
59.06 0.358 2.93 -- 0.0667 4.03 -- -- 0.106 2.73 0.7234 97 7.8 2.68
78.72 0.415 2.93 -0.0382 -- -- -- -- 0.0788 -- -- -- -- --
78.35 0.414 2.93 -- 0.0887 -- -- -- 0.0814 6.42 -- -- -- --
59.32 0.359 2.92 -- -- 4.01 -- -- 0.109 -- 0.7155 97 7.82 2.13
78.76 0.414 2.93 -- -- -- -- -- 0.083 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.90 wind 1.0 90 < th dose dependent rect. 8 2
3 60.19 wind 1.0 90 < th dose independent rect. 8 1
13 67.20 radiation 10.0 90 < th dose dependent rect. 8 2
31 70.01 humidity 80.0 30 > th dose dependent rect. 9 1
44 70.87 radiation 10.0 10 > th dose independent rect. 6 1
71 70.87 radiation 10.0 10 > th dose dependent rect. 6 1
105 70.91 wind 1.0 10 < th dose independent rect. 6 4
127 71.61 wind 3.0 10 < th dose dependent rect. 6 4
130 71.73 radiation 10.0 90 < th dose independent rect. 8 3
131 71.76 radiation 10.0 90 < th dose independent rect. 9 1
146 72.25 wind 3.0 10 < th dose dependent rect. 6 7
167 72.64 humidity 80.0 10 > th dose independent rect. 10 1
172 72.69 wind 9.0 1440 < th dose independent rect. 23 1
173 72.69 temperature 10.0 1440 > th dose independent rect. 23 1
176 72.69 temperature 30.0 1440 < th dose independent rect. 23 1
180 72.69 humidity 50.0 1440 > th dose independent rect. 23 1
190 72.69 atmosphere 995.0 1440 > th dose independent rect. 23 1
191 72.69 radiation 1.0 1440 < th dose independent rect. 23 1
211 72.69 temperature 10.0 1440 > th dose independent rect. 24 23
214 72.69 radiation 1.0 1440 < th dose dependent rect. 23 1
221 72.72 temperature 25.0 30 > th dose independent rect. 22 1
230 72.78 temperature 20.0 30 > th dose dependent rect. 22 1
233 72.80 atmosphere 1005.0 30 > th dose dependent rect. 22 1
235 72.81 radiation 40.0 43200 < th dose dependent rect. 23 1
236 72.82 humidity 90.0 30 < th dose independent rect. 22 1
250 72.87 wind 3.0 30 < th dose independent rect. 22 1
252 72.88 atmosphere 1005.0 30 > th dose independent rect. 22 1
254 72.89 humidity 80.0 30 > th dose independent rect. 22 1
266 72.93 precipitation 0.1 30 < th dose independent rect. 22 1
267 72.93 precipitation 0.1 30 < th dose dependent rect. 22 1
273 72.95 wind 5.0 30 < th dose dependent rect. 22 1
279 72.96 temperature 10.0 30 > th dose independent rect. 22 1
281 72.96 temperature 30.0 30 < th dose independent rect. 22 1
282 72.96 humidity 50.0 30 > th dose independent rect. 22 1
286 72.96 atmosphere 1010.0 30 < th dose independent rect. 22 1
288 72.96 radiation 1.0 30 < th dose independent rect. 22 1
293 72.96 temperature 10.0 30 > th dose independent rect. 23 23
294 72.96 radiation 1.0 30 < th dose dependent rect. 22 1
300 72.97 wind 1.0 30 > th dose independent rect. 22 1
303 72.99 humidity 50.0 30 > th dose dependent rect. 22 1
307 73.01 humidity 90.0 30 < th dose dependent rect. 22 1
315 73.09 wind 1.0 30 > th dose dependent rect. 22 1
318 73.10 atmosphere 1005.0 30 > th dose dependent rect. 6 1
326 73.19 atmosphere 1015.0 30 < th dose dependent rect. 22 1
340 73.27 wind 9.0 30 < th dose independent rect. 23 23
350 73.34 temperature 30.0 30 < th dose dependent rect. 22 1
405 73.59 humidity 80.0 30 > th dose dependent rect. 6 1
409 73.63 wind 1.0 10 < th dose independent sin 21 NA
476 73.89 temperature 30.0 30 < th dose dependent rect. 6 1
515 74.03 wind 1.0 10 > th dose independent sin 21 NA
577 74.35 radiation 10.0 10 < th dose dependent rect. 6 5
584 74.39 radiation 10.0 10 < th dose independent rect. 6 5
649 74.59 temperature 25.0 10 > th dose independent rect. 6 1
655 74.61 wind 9.0 1440 < th dose independent rect. 7 1
656 74.61 temperature 10.0 1440 > th dose independent rect. 7 1
660 74.61 temperature 30.0 1440 < th dose independent rect. 7 1
664 74.61 humidity 50.0 1440 > th dose independent rect. 7 1
669 74.61 atmosphere 995.0 1440 > th dose independent rect. 7 1
670 74.61 atmosphere 1015.0 1440 < th dose independent rect. 7 1
674 74.61 temperature 10.0 1440 > th dose independent rect. 8 23
688 74.64 humidity 80.0 30 > th dose independent rect. 6 1
691 74.65 humidity 90.0 30 < th dose independent rect. 6 1
692 74.65 atmosphere 1005.0 30 > th dose independent rect. 6 1
698 74.68 temperature 10.0 30 > th dose independent rect. 6 1
700 74.68 temperature 30.0 30 < th dose independent rect. 6 1
701 74.68 humidity 50.0 30 > th dose independent rect. 6 1
704 74.68 atmosphere 995.0 30 > th dose independent rect. 6 1
705 74.68 atmosphere 1015.0 30 < th dose independent rect. 6 1
706 74.68 radiation 20.0 30 < th dose independent rect. 6 1
709 74.68 precipitation 0.1 30 < th dose independent rect. 6 1
710 74.68 temperature 10.0 30 > th dose independent rect. 7 23
711 74.68 precipitation 0.1 30 < th dose dependent rect. 6 1
712 74.69 wind 1.0 30 > th dose independent rect. 6 1
714 74.69 radiation 30.0 1440 < th dose independent rect. 24 7
724 74.71 atmosphere 1010.0 10 < th dose independent rect. 23 10
728 74.73 humidity 60.0 1440 > th dose independent rect. 24 9
733 74.76 wind 1.0 90 < th dose dependent sin 21 NA
770 74.87 radiation 20.0 10 < th dose dependent rect. 6 1
778 74.90 temperature 10.0 30 > th dose dependent rect. 6 1
801 74.98 wind 3.0 10 < th dose dependent sin 23 NA
837 75.03 humidity 60.0 1440 < th dose independent rect. 8 1
852 75.04 humidity 60.0 270 < th dose independent rect. 8 1
878 75.04 wind 1.0 10 < th dose dependent sin 21 NA
879 75.04 humidity 60.0 270 < th dose dependent rect. 8 1
921 75.05 humidity 60.0 90 < th dose independent rect. 18 15
922 75.05 wind 9.0 30 < th dose independent rect. 7 23
924 75.05 humidity 60.0 90 < th dose dependent rect. 18 15
940 75.08 humidity 60.0 10 < th dose independent rect. 18 16
947 75.08 humidity 60.0 10 < th dose dependent rect. 18 16
952 75.09 humidity 60.0 10 < th dose independent rect. 9 1