Os12g0206700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0206700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.34 | 0.267 | 10.3 | -0.255 | 0.372 | 1.21 | 0.221 | 2.34 | -0.0679 | 1.81 | 0.7851 | 1425 | -- | -- |
| 35.42 | 0.277 | 10.3 | -0.05 | 0.375 | 0.676 | 0.0733 | -- | -0.0697 | 1.33 | 0.9048 | 1390 | -- | -- |
| 32.5 | 0.266 | 10.3 | -0.254 | 0.387 | 1.18 | -- | 2.26 | -0.0705 | 1.61 | 0.78 | 1417 | -- | -- |
| 35.23 | 0.276 | 10.3 | 0.016 | 0.355 | 0.699 | -- | -- | -0.0675 | 1.62 | 0.8999 | 1410 | -- | -- |
| 34.82 | 0.275 | 10.3 | -0.125 | -- | 1.08 | -- | 1.64 | -0.111 | -- | 0.3891 | 4640 | -- | -- |
| 40.52 | 0.298 | 10.3 | -0.194 | 0.317 | -- | 0.0501 | -- | -0.127 | 1.98 | -- | -- | -- | -- |
| 40.53 | 0.298 | 10.3 | -0.195 | 0.317 | -- | -- | -- | -0.127 | 1.95 | -- | -- | -- | -- |
| 34.54 | 0.274 | 10.3 | -0.00445 | -- | 0.774 | -- | -- | -0.0496 | -- | 1.038 | 4688 | -- | -- |
| 33.81 | 0.271 | 10.3 | -- | 0.358 | 0.531 | -- | -- | -0.0431 | 1.71 | 0.8556 | 12790 | -- | -- |
| 46.6 | 0.319 | 10.3 | -0.182 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 41.54 | 0.301 | 10.3 | -- | 0.314 | -- | -- | -- | -0.106 | 1.94 | -- | -- | -- | -- |
| 34.01 | 0.272 | 10.3 | -- | -- | 0.808 | -- | -- | -0.000495 | -- | 1.64 | 4672 | -- | -- |
| 47.47 | 0.322 | 10.3 | -- | -- | -- | -- | -- | -0.0997 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 5 | 28.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 7 | 28.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 12 | 28.22 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 13 | 28.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 14 | 28.23 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 53 | 28.39 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 95 | 28.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 99 | 28.74 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 100 | 28.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 101 | 28.78 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 107 | 28.83 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 108 | 28.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 109 | 28.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 110 | 28.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 112 | 28.84 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 121 | 28.87 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 147 | 28.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 149 | 28.94 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 155 | 28.97 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 163 | 28.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 168 | 29.00 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 178 | 29.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 208 | 29.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 218 | 29.15 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 240 | 29.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 272 | 29.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 286 | 29.26 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 287 | 29.26 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 300 | 29.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 328 | 29.34 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 352 | 29.37 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 356 | 29.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 398 | 29.43 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 416 | 29.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 424 | 29.47 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 426 | 29.47 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 448 | 29.49 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 467 | 29.53 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 471 | 29.54 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 494 | 29.57 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 502 | 29.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 514 | 29.60 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 524 | 29.61 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 539 | 29.64 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 554 | 29.65 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 564 | 29.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 590 | 29.70 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 594 | 29.71 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 601 | 29.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 616 | 29.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 627 | 29.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 649 | 29.76 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 660 | 29.76 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 662 | 29.77 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 666 | 29.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 19 |
| 672 | 29.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 675 | 29.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 680 | 29.78 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 689 | 29.79 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 700 | 29.79 | wind | 5 | 43200 | < th | dose dependent | sin | 3 | NA |
| 701 | 29.79 | wind | 3 | 43200 | < th | dose dependent | sin | 6 | NA |
| 709 | 29.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 780 | 29.87 | wind | 1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 816 | 29.90 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 819 | 29.90 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 839 | 29.93 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 847 | 29.94 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 857 | 29.95 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 921 | 30.00 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 986 | 30.05 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 987 | 30.05 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 997 | 30.06 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |