Os12g0205500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0205500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.39 | 0.255 | 7.08 | 1.97 | 0.422 | -1.14 | -0.612 | 0.217 | 0.513 | 6.76 | 21.24 | 1983 | -- | -- |
| 29.44 | 0.253 | 7.07 | 1.99 | 0.427 | -1.16 | -0.592 | -- | 0.514 | 6.72 | 21.43 | 1970 | -- | -- |
| 30.31 | 0.256 | 7.08 | 1.96 | 0.414 | -1.14 | -- | 0.255 | 0.512 | 6.8 | 21.52 | 1908 | -- | -- |
| 30.34 | 0.257 | 7.07 | 1.98 | 0.418 | -1.22 | -- | -- | 0.517 | 6.83 | 21.31 | 1927 | -- | -- |
| 38.28 | 0.288 | 7.09 | 1.98 | -- | -1.19 | -- | 0.508 | 0.514 | -- | 21.72 | 1481 | -- | -- |
| 42.97 | 0.307 | 7.04 | 2.37 | 0.407 | -- | -0.665 | -- | 0.685 | 6.57 | -- | -- | -- | -- |
| 44.07 | 0.311 | 7.04 | 2.36 | 0.404 | -- | -- | -- | 0.687 | 6.68 | -- | -- | -- | -- |
| 38.38 | 0.289 | 7.08 | 2.02 | -- | -1.43 | -- | -- | 0.55 | -- | 20.77 | 1494 | -- | -- |
| 50.39 | 0.331 | 7.19 | -- | 0.406 | -1.99 | -- | -- | -0.0113 | 6.9 | 20.89 | 47520 | -- | -- |
| 52.6 | 0.339 | 7.04 | 2.37 | -- | -- | -- | -- | 0.695 | -- | -- | -- | -- | -- |
| 190.82 | 0.646 | 7.09 | -- | 0.435 | -- | -- | -- | 0.424 | 6.36 | -- | -- | -- | -- |
| 59.03 | 0.358 | 7.2 | -- | -- | -1.99 | -- | -- | -0.00649 | -- | 20.9 | 47520 | -- | -- |
| 200.65 | 0.661 | 7.1 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.71 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 32 | 30.07 | temperature | 20 | 1440 | < th | dose dependent | sin | 3 | NA |
| 70 | 30.29 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 86 | 30.36 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 92 | 30.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 98 | 30.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 118 | 30.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 137 | 30.50 | temperature | 20 | 720 | < th | dose dependent | sin | 14 | NA |
| 145 | 30.51 | temperature | 20 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 566 | 31.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 602 | 31.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 681 | 31.30 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 745 | 31.39 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 758 | 31.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 821 | 31.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 871 | 31.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 920 | 31.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 931 | 31.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 960 | 31.71 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 983 | 31.75 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |