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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0204700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.425) R2 : -80.6
β1 : 1.14 (1.56) R2dD : -0.119 R2D : -0.139
β2 : 0.163 (1.09) R2dC : -0.0778 R2C : -0.0587
β3 : 96.1 (6.11) R2dE : -24.8 R2E : -43.9
β4 : 0.196 (4.77) R2dD*C : -0.034 R2D*C : -0.0636
β5 : 437 (26.1) R2dD*E : -36.5 R2D*E : -55.7
γ1 : -0.0942 (0.907) R2dN8 : -0.00904 R2N8 : -0.0487
σ : 0.823
deviance : 306.73
__
_____
C
peak time of C : 7.72
E
wheather : wind
threshold : 3
memory length : 3
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.73 0.823 3.13 1.14 0.163 96.1 0.196 437 -0.0942 7.72 3 3 4 3
338.94 0.864 2.92 0.153 0.199 2.47 0.508 -- -0.102 7.19 3 3 4 3
324.25 0.845 2.96 0.234 0.205 9.78 -- 22.3 -0.106 8.09 3 3 4 3
318.86 0.832 2.88 0.157 0.169 4.72 -- -- -0.0178 6.78 4.926 47 4.88 2.52
326.53 0.846 2.96 0.238 -- 9.87 -- 22.3 -0.103 -- 3 3 4 3
350.58 0.878 2.93 0.0925 0.244 -- 0.196 -- -0.125 7.54 -- -- -- --
350.68 0.877 2.93 0.0976 0.243 -- -- -- -0.125 7.69 -- -- -- --
316.66 0.829 2.91 0.209 -- 5.78 -- -- -0.0947 -- 5.1 47 4.89 2.43
318.39 0.831 2.9 -- 0.172 5.63 -- -- -0.0698 7.08 4.939 47 4.78 2.64
353.87 0.879 2.93 0.101 -- -- -- -- -0.121 -- -- -- -- --
350.93 0.876 2.93 -- 0.244 -- -- -- -0.136 7.66 -- -- -- --
317.03 0.829 2.93 -- -- 5.74 -- -- -0.108 -- 5.172 47 4.9 2.43
354.14 0.878 2.94 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.73 wind 5.0 90 > th dose independent rect. 4 3
2 306.81 wind 5.0 90 > th dose dependent rect. 5 2
7 322.79 precipitation 0.1 90 > th dose independent rect. 5 1
8 322.79 precipitation 0.1 90 > th dose dependent rect. 5 1
17 323.63 precipitation 0.1 10 > th dose independent rect. 4 4
168 328.58 wind 1.0 30 < th dose dependent rect. 6 1
175 329.14 radiation 1.0 10 < th dose independent rect. 6 1
208 331.76 radiation 1.0 30 < th dose dependent rect. 5 2
219 332.27 precipitation 0.1 10 > th dose independent rect. 5 19
221 332.27 precipitation 0.1 10 > th dose dependent rect. 5 19
235 332.83 radiation 20.0 90 > th dose independent rect. 6 1
249 332.83 radiation 20.0 90 > th dose dependent rect. 6 1
270 333.22 humidity 80.0 30 < th dose independent rect. 1 1
273 333.22 humidity 80.0 30 < th dose dependent rect. 1 1
297 333.69 wind 3.0 30 > th dose independent rect. 1 7
308 333.96 humidity 90.0 30 < th dose dependent rect. 1 7
378 335.79 wind 5.0 30 > th dose dependent rect. 1 7
402 336.29 wind 1.0 10 < th dose independent rect. 6 1
454 337.08 precipitation 0.1 10 > th dose dependent sin 0 NA
456 337.11 precipitation 0.1 10 > th dose independent sin 0 NA
467 337.36 humidity 90.0 10 > th dose independent rect. 6 1
470 337.37 radiation 10.0 30 > th dose independent rect. 16 16
530 337.99 wind 1.0 10 < th dose independent rect. 15 7
533 338.01 wind 1.0 10 < th dose independent rect. 17 5
535 338.01 wind 1.0 10 < th dose dependent rect. 17 5
538 338.02 wind 1.0 10 < th dose independent rect. 21 1
542 338.02 wind 1.0 10 < th dose dependent rect. 21 1
556 338.18 wind 1.0 4320 > th dose independent rect. 10 3
570 338.26 wind 1.0 4320 > th dose independent rect. 10 1
573 338.28 atmosphere 995.0 4320 > th dose independent rect. 6 3
597 338.39 temperature 20.0 90 < th dose dependent rect. 2 1
605 338.48 wind 1.0 4320 < th dose independent rect. 10 1
613 338.57 humidity 80.0 10 < th dose independent rect. 1 7
615 338.58 wind 1.0 4320 < th dose independent rect. 10 3
618 338.63 precipitation 0.1 270 > th dose independent rect. 23 7
619 338.63 precipitation 0.1 270 > th dose dependent rect. 23 7
637 338.66 wind 3.0 4320 < th dose dependent rect. 10 1
638 338.68 wind 9.0 1440 < th dose independent rect. 6 3
639 338.68 temperature 10.0 1440 > th dose independent rect. 6 3
642 338.68 humidity 50.0 1440 > th dose independent rect. 6 3
645 338.68 atmosphere 1015.0 1440 < th dose independent rect. 6 3
647 338.68 temperature 10.0 1440 > th dose independent rect. 9 21
666 338.77 wind 5.0 270 > th dose dependent rect. 2 1
692 338.90 precipitation 0.1 90 > th dose dependent rect. 2 5
699 338.93 precipitation 0.1 90 > th dose independent rect. 2 5
754 339.26 radiation 20.0 4320 < th dose independent rect. 23 7
783 339.50 humidity 90.0 30 < th dose independent rect. 7 1
784 339.50 temperature 20.0 720 > th dose independent rect. 12 16
811 339.54 humidity 90.0 30 < th dose dependent rect. 6 2
820 339.59 temperature 20.0 30 > th dose independent rect. 5 3
823 339.60 wind 9.0 1440 < th dose independent rect. 23 7
834 339.68 temperature 20.0 90 < th dose dependent rect. 24 1
836 339.70 radiation 1.0 30 < th dose dependent rect. 5 7
838 339.71 atmosphere 1005.0 10 < th dose independent rect. 3 1
876 339.85 humidity 80.0 90 > th dose independent rect. 22 7
895 339.92 atmosphere 1005.0 90 > th dose dependent rect. 1 1
897 339.93 precipitation 0.1 90 < th dose independent sin 6 NA
898 339.93 precipitation 0.1 90 < th dose dependent sin 6 NA
900 339.94 atmosphere 1015.0 30 < th dose dependent rect. 8 21
928 340.08 temperature 10.0 1440 > th dose independent rect. 23 7
931 340.08 temperature 30.0 1440 < th dose independent rect. 23 7
935 340.08 humidity 50.0 1440 > th dose independent rect. 23 7
944 340.08 atmosphere 995.0 1440 > th dose independent rect. 23 7
954 340.08 temperature 10.0 1440 > th dose independent rect. 6 17
961 340.10 radiation 40.0 1440 > th dose dependent rect. 15 1
981 340.11 wind 7.0 720 < th dose independent rect. 21 8
982 340.11 wind 3.0 4320 < th dose dependent rect. 10 4
994 340.20 atmosphere 1015.0 1440 < th dose independent rect. 24 6