Os12g0204600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0204600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.27 | 0.271 | 9.59 | 0.685 | 0.334 | 0.666 | -0.206 | -2.47 | 0.226 | 12.2 | 25.37 | 4348 | -- | -- |
| 33.07 | 0.268 | 9.52 | 1.05 | 0.362 | 0.693 | -0.187 | -- | 0.284 | 12 | 20 | 6198 | -- | -- |
| 33.45 | 0.269 | 9.59 | 0.681 | 0.332 | 0.663 | -- | -2.46 | 0.226 | 12.1 | 25.38 | 4370 | -- | -- |
| 32.61 | 0.266 | 9.54 | 0.96 | 0.306 | 0.816 | -- | -- | 0.263 | 12 | 20.1 | 6183 | -- | -- |
| 39.89 | 0.294 | 9.59 | 0.712 | -- | 0.615 | -- | -2.38 | 0.241 | -- | 25.37 | 4597 | -- | -- |
| 43.94 | 0.311 | 9.48 | 1.53 | 0.294 | -- | -0.163 | -- | 0.505 | 12 | -- | -- | -- | -- |
| 44.06 | 0.311 | 9.48 | 1.53 | 0.295 | -- | -- | -- | 0.505 | 12 | -- | -- | -- | -- |
| 38.31 | 0.288 | 9.54 | 0.953 | -- | 0.817 | -- | -- | 0.257 | -- | 19.9 | 6038 | -- | -- |
| 36.21 | 0.28 | 9.58 | -- | 0.301 | 1.38 | -- | -- | 0.0367 | 11.9 | 18.4 | 26364 | -- | -- |
| 49.53 | 0.329 | 9.49 | 1.52 | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
| 105.54 | 0.481 | 9.52 | -- | 0.276 | -- | -- | -- | 0.335 | 11.7 | -- | -- | -- | -- |
| 41.8 | 0.301 | 9.59 | -- | -- | 1.4 | -- | -- | 0.0516 | -- | 17.12 | 47520 | -- | -- |
| 110.33 | 0.49 | 9.53 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.88 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 2 | 31.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 3 | 31.93 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 4 | 32.00 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 17 | 32.06 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 25 | 32.08 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 50 | 32.13 | temperature | 20.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 51 | 32.13 | temperature | 20.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 118 | 32.20 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 129 | 32.21 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 262 | 32.33 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 263 | 32.33 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 353 | 32.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 365 | 32.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 368 | 32.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 385 | 32.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 614 | 32.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 615 | 32.58 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 641 | 32.60 | temperature | 20.0 | 14400 | < th | dose independent | no | NA | NA |
| 682 | 32.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 690 | 32.64 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 701 | 32.65 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 724 | 32.66 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 800 | 32.71 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 837 | 32.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 906 | 32.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 938 | 32.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 980 | 32.83 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 8 |