Os12g0203900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0203900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.1 | 0.439 | 6.36 | 0.724 | 0.516 | 0.615 | 0.0375 | -0.461 | 0.078 | 16.8 | 20 | 10 | -- | -- |
| 88.12 | 0.437 | 6.35 | 0.797 | 0.506 | 0.645 | -0.122 | -- | 0.0922 | 16.9 | 20 | 8 | -- | -- |
| 87.11 | 0.435 | 6.36 | 0.725 | 0.516 | 0.617 | -- | -0.453 | 0.0781 | 16.8 | 20.01 | 9 | -- | -- |
| 88.17 | 0.437 | 6.35 | 0.802 | 0.506 | 0.644 | -- | -- | 0.0948 | 16.9 | 20.04 | 9 | -- | -- |
| 100.73 | 0.467 | 6.35 | 0.702 | -- | 0.713 | -- | -0.334 | 0.0529 | -- | 20.01 | 7 | -- | -- |
| 104.84 | 0.48 | 6.32 | 0.968 | 0.605 | -- | 0.0249 | -- | 0.212 | 16.1 | -- | -- | -- | -- |
| 104.84 | 0.479 | 6.32 | 0.968 | 0.605 | -- | -- | -- | 0.212 | 16.1 | -- | -- | -- | -- |
| 101.31 | 0.469 | 6.35 | 0.76 | -- | 0.731 | -- | -- | 0.0656 | -- | 20.06 | 7 | -- | -- |
| 102.18 | 0.471 | 6.37 | -- | 0.493 | 0.946 | -- | -- | 0.00625 | 17.2 | 19.1 | 2 | -- | -- |
| 124.75 | 0.522 | 6.32 | 0.943 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 129.54 | 0.532 | 6.35 | -- | 0.586 | -- | -- | -- | 0.105 | 16.1 | -- | -- | -- | -- |
| 114.46 | 0.498 | 6.37 | -- | -- | 1.01 | -- | -- | -0.0141 | -- | 19.02 | 2 | -- | -- |
| 148.22 | 0.568 | 6.34 | -- | -- | -- | -- | -- | 0.0916 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.88 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 2 | 78.10 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 9 | 80.16 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 15 | 80.73 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 24 | 81.29 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 25 | 81.32 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 30 | 81.54 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 79 | 83.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 124 | 84.62 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |
| 126 | 84.63 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 127 | 84.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 175 | 85.79 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 191 | 86.14 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 16 |
| 203 | 86.26 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 12 |
| 230 | 86.55 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 21 |
| 236 | 86.63 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 278 | 87.00 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 22 |
| 280 | 87.02 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 22 |
| 281 | 87.03 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 23 |
| 297 | 87.13 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 16 |
| 302 | 87.15 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 14 |
| 310 | 87.18 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 378 | 87.56 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 391 | 87.64 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 394 | 87.66 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 18 |
| 405 | 87.72 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 451 | 87.94 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 482 | 88.16 | temperature | 20 | 10 | < th | dose dependent | sin | 7 | NA |
| 577 | 88.48 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 830 | 89.45 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 893 | 89.77 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 894 | 89.78 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 9 |
| 909 | 89.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 921 | 89.92 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 956 | 90.06 | temperature | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 959 | 90.07 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 968 | 90.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 22 |
| 980 | 90.13 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 992 | 90.15 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 999 | 90.17 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 20 |