Os12g0203200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0203200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.41 | 0.615 | 3.87 | -2 | 0.458 | -1.26 | -0.0575 | -0.82 | -0.303 | 12.7 | 5.017 | 4316 | 1.07 | 0.633 |
| 171.52 | 0.61 | 3.87 | -1.96 | 0.424 | -1.22 | -0.0916 | -- | -0.282 | 12.6 | 5.007 | 4326 | 1.11 | 0.509 |
| 168.89 | 0.605 | 3.87 | -1.96 | 0.442 | -1.15 | -- | -0.635 | -0.282 | 12.7 | 4.9 | 4310 | 1.2 | 0.383 |
| 168.84 | 0.605 | 3.87 | -1.91 | 0.484 | -1.11 | -- | -- | -0.279 | 12.6 | 4.991 | 4318 | 1.28 | 0.235 |
| 181.49 | 0.627 | 3.87 | -1.92 | -- | -1.17 | -- | -0.537 | -0.276 | -- | 4.944 | 4313 | 1.23 | 0.382 |
| 200.12 | 0.663 | 3.89 | -2.14 | 0.449 | -- | 0.148 | -- | -0.437 | 12 | -- | -- | -- | -- |
| 200.18 | 0.663 | 3.89 | -2.13 | 0.449 | -- | -- | -- | -0.436 | 12.2 | -- | -- | -- | -- |
| 181.65 | 0.628 | 3.86 | -1.94 | -- | -1.08 | -- | -- | -0.266 | -- | 4.945 | 4310 | 1.29 | 0.245 |
| 243.23 | 0.726 | 3.82 | -- | 0.398 | -1.53 | -- | -- | -0.0176 | 13.2 | 5.098 | 4306 | 1.25 | 0.233 |
| 212.87 | 0.682 | 3.9 | -2.15 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 320 | 0.837 | 3.84 | -- | 0.48 | -- | -- | -- | -0.198 | 12.5 | -- | -- | -- | -- |
| 256.85 | 0.746 | 3.8 | -- | -- | -1.54 | -- | -- | 0.0303 | -- | 5.098 | 4306 | 1.25 | 0.233 |
| 334.45 | 0.854 | 3.85 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.79 | wind | 5.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 2 | 173.88 | wind | 5.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 5 | 175.12 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 4 |
| 6 | 175.14 | wind | 1.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 10 | 175.41 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 24 | 176.12 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 68 | 178.35 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 76 | 178.66 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 90 | 178.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 105 | 179.16 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 131 | 179.77 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 132 | 179.79 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 156 | 180.14 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 163 | 180.23 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 168 | 180.25 | wind | 3.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 176 | 180.34 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 184 | 180.44 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 190 | 180.51 | wind | 3.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 221 | 180.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 228 | 180.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 243 | 181.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 246 | 181.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 263 | 181.17 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 266 | 181.20 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 268 | 181.22 | wind | 3.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 269 | 181.22 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 271 | 181.24 | wind | 7.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 277 | 181.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 301 | 181.44 | wind | 1.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 310 | 181.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 312 | 181.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 328 | 181.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 349 | 181.67 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 355 | 181.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 3 |
| 366 | 181.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 367 | 181.76 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 388 | 181.83 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 425 | 181.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 446 | 182.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 451 | 182.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 456 | 182.08 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 468 | 182.13 | wind | 7.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 470 | 182.13 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 504 | 182.23 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 551 | 182.38 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 572 | 182.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 579 | 182.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 590 | 182.51 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 630 | 182.65 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 642 | 182.70 | wind | 3.0 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 684 | 182.83 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 723 | 182.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 733 | 182.99 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 735 | 182.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 754 | 183.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 763 | 183.09 | wind | 5.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 775 | 183.12 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 801 | 183.17 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 804 | 183.19 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 844 | 183.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 849 | 183.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 852 | 183.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 856 | 183.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 863 | 183.35 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 875 | 183.37 | wind | 1.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 899 | 183.41 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 943 | 183.49 | wind | 9.0 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 955 | 183.53 | wind | 5.0 | 10 | < th | dose dependent | rect. | 6 | 7 |
| 963 | 183.55 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 10 |