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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0203000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclin-dependent protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.74 (0.0297) R2 : 0.816
β1 : 0.845 (0.109) R2dD : 0.0253 R2D : 0.0227
β2 : 1.93 (0.0778) R2dC : 0.295 R2C : 0.504
β3 : 2.37 (0.101) R2dE : 0.264 R2E : 0.493
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.328 (0.0634) R2dN8 : 0.0146 R2N8 : 0.00435
σ : 0.555
deviance : 142
__
_____
C
peak time of C : 13.7
E
wheather : temperature
threshold : 6.036
memory length : 131
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.22
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.35 0.549 4.74 0.926 1.9 2.36 -1.36 1.01 0.341 13.8 7.806 125 8.26 19
137.32 0.546 4.74 0.878 1.91 2.41 -1.08 -- 0.337 13.6 6.648 128 8.25 19
142.41 0.556 4.74 0.868 1.92 2.4 -- 0.32 0.348 13.6 6.706 121 8.37 18.9
142 0.555 4.74 0.845 1.93 2.37 -- -- 0.328 13.7 6.036 131 8.22 19
263.03 0.755 4.82 0.611 -- 3.71 -- 0.715 0.0564 -- 16.65 19 8.82 18.7
218.3 0.693 4.75 1.14 3.05 -- -0.719 -- 0.425 15.4 -- -- -- --
219.93 0.694 4.76 1.12 3.05 -- -- -- 0.42 15.4 -- -- -- --
261.36 0.753 4.84 0.446 -- 3.66 -- -- 0.00269 -- 16.77 17 8.85 18.7
160.1 0.589 4.76 -- 1.95 2.44 -- -- 0.265 13.6 7.523 131 8.21 19.1
742.67 1.27 4.76 0.993 -- -- -- -- 0.34 -- -- -- -- --
253.1 0.744 4.78 -- 3.02 -- -- -- 0.295 15.4 -- -- -- --
265.42 0.759 4.84 -- -- 3.71 -- -- -0.0391 -- 16.84 14 8.89 18.4
768.66 1.29 4.78 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.59 temperature 10.0 90 > th dose dependent rect. 8 19
3 142.24 temperature 10.0 10 > th dose dependent rect. 9 19
53 156.30 radiation 10.0 270 < th dose dependent rect. 3 14
59 157.08 radiation 10.0 270 < th dose dependent rect. 3 12
68 158.57 wind 7.0 270 < th dose independent rect. 6 21
87 161.13 temperature 30.0 90 < th dose dependent rect. 3 16
103 162.11 temperature 30.0 90 < th dose dependent rect. 3 18
104 162.22 radiation 10.0 270 < th dose independent rect. 3 4
106 162.33 precipitation 0.1 270 < th dose independent rect. 3 3
107 162.33 precipitation 0.1 270 < th dose dependent rect. 3 3
111 162.66 radiation 20.0 270 < th dose dependent rect. 3 4
128 163.57 wind 7.0 270 < th dose independent rect. 3 3
142 163.84 temperature 10.0 270 > th dose independent rect. 3 3
144 163.84 temperature 30.0 270 < th dose independent rect. 3 3
145 163.84 humidity 50.0 270 > th dose independent rect. 3 3
148 163.84 atmosphere 995.0 270 > th dose independent rect. 3 3
149 163.84 atmosphere 1015.0 270 < th dose independent rect. 3 3
153 163.84 temperature 10.0 270 > th dose independent rect. 6 21
164 164.19 radiation 10.0 270 < th dose independent rect. 3 15
168 164.27 wind 7.0 90 < th dose independent rect. 9 18
206 165.65 temperature 30.0 90 < th dose dependent rect. 3 20
211 165.87 radiation 40.0 270 < th dose dependent rect. 15 16
217 165.97 precipitation 0.1 270 < th dose independent rect. 6 21
218 165.97 precipitation 0.1 270 < th dose dependent rect. 6 21
223 166.07 radiation 10.0 270 < th dose dependent sin 2 NA
246 166.44 temperature 10.0 10 > th dose dependent rect. 9 7
251 166.53 temperature 10.0 90 > th dose dependent rect. 8 8
257 166.67 humidity 50.0 270 > th dose dependent rect. 3 3
260 166.69 wind 1.0 270 > th dose independent rect. 3 3
273 166.91 wind 9.0 270 < th dose dependent rect. 7 20
280 167.14 wind 9.0 270 < th dose dependent rect. 3 3
324 167.63 temperature 25.0 270 < th dose independent rect. 2 17
358 168.08 wind 9.0 90 < th dose dependent rect. 9 19
372 168.38 wind 1.0 270 > th dose independent rect. 2 5
395 168.70 radiation 20.0 270 < th dose independent rect. 15 16
446 169.56 radiation 10.0 270 > th dose independent sin 4 NA
449 169.59 temperature 10.0 270 > th dose dependent rect. 3 3
464 169.79 radiation 10.0 270 > th dose independent rect. 16 22
466 169.81 wind 7.0 270 < th dose independent rect. 7 9
489 170.03 temperature 10.0 90 > th dose independent rect. 9 18
541 170.56 temperature 10.0 270 > th dose dependent rect. 21 15
564 170.70 atmosphere 995.0 270 > th dose dependent rect. 3 3
626 171.36 precipitation 0.1 90 < th dose independent rect. 9 18
628 171.36 precipitation 0.1 90 < th dose dependent rect. 9 18
736 172.24 radiation 10.0 90 > th dose independent rect. 8 8
750 172.26 radiation 10.0 270 > th dose independent rect. 6 8
773 172.29 temperature 30.0 270 < th dose dependent rect. 3 3
774 172.30 atmosphere 1015.0 270 < th dose independent rect. 7 19
872 173.03 wind 9.0 270 < th dose dependent rect. 7 8
929 173.39 atmosphere 1015.0 270 < th dose independent rect. 6 21
945 173.47 atmosphere 1015.0 90 < th dose independent rect. 9 18