Os12g0202900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0202900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.63 | 0.462 | 8.92 | 2.6 | 0.581 | -0.799 | 0.884 | 0.344 | 0.671 | 23.4 | 88.72 | 1441 | -- | -- |
| 96.76 | 0.458 | 8.92 | 2.59 | 0.596 | -0.783 | 0.879 | -- | 0.657 | 23.5 | 86.41 | 1419 | -- | -- |
| 99.94 | 0.466 | 8.92 | 2.58 | 0.584 | -0.789 | -- | 0.397 | 0.667 | 23.6 | 88.74 | 1411 | -- | -- |
| 100.11 | 0.466 | 8.93 | 2.54 | 0.596 | -0.758 | -- | -- | 0.652 | 23.6 | 87.52 | 1415 | -- | -- |
| 118.72 | 0.51 | 8.91 | 2.46 | -- | -0.739 | -- | -0.493 | 0.669 | -- | 110.2 | 1580 | -- | -- |
| 111.6 | 0.495 | 8.92 | 2.49 | 0.571 | -- | 0.783 | -- | 0.663 | 23.2 | -- | -- | -- | -- |
| 114.21 | 0.5 | 8.93 | 2.46 | 0.567 | -- | -- | -- | 0.66 | 23.3 | -- | -- | -- | -- |
| 119.04 | 0.508 | 8.91 | 2.54 | -- | -0.794 | -- | -- | 0.691 | -- | 89.87 | 1585 | -- | -- |
| 192.4 | 0.646 | 9.01 | -- | 0.573 | -1.88 | -- | -- | 0.273 | 23.5 | 75 | 47520 | -- | -- |
| 134.33 | 0.542 | 8.91 | 2.47 | -- | -- | -- | -- | 0.665 | -- | -- | -- | -- | -- |
| 273.45 | 0.774 | 8.99 | -- | 0.593 | -- | -- | -- | 0.386 | 23.6 | -- | -- | -- | -- |
| 213.03 | 0.68 | 9 | -- | -- | -1.9 | -- | -- | 0.277 | -- | 75 | 47520 | -- | -- |
| 295.58 | 0.802 | 8.97 | -- | -- | -- | -- | -- | 0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.74 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 3 | 92.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 10 | 93.00 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 30 | 93.22 | humidity | 70 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 55 | 93.49 | humidity | 50 | 1440 | > th | dose dependent | sin | 17 | NA |
| 63 | 93.58 | humidity | 90 | 1440 | < th | dose dependent | sin | 17 | NA |
| 92 | 93.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 141 | 94.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 312 | 94.83 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 398 | 95.10 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 449 | 95.24 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 492 | 95.39 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 523 | 95.47 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 583 | 95.61 | humidity | 80 | 1440 | < th | dose independent | sin | 20 | NA |
| 710 | 95.99 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 715 | 96.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 782 | 96.15 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 852 | 96.29 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 853 | 96.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 885 | 96.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 890 | 96.36 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 935 | 96.44 | humidity | 70 | 1440 | > th | dose independent | sin | 14 | NA |
| 963 | 96.49 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 1 |
| 971 | 96.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 998 | 96.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 8 |