Os12g0202700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0202700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Winged helix repressor DNA-binding domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.04 | 0.681 | 7.9 | 1.9 | 1.22 | 1.99 | 1.52 | 1.08 | 0.529 | 22.2 | 59.76 | 10 | -- | -- |
| 212.56 | 0.679 | 7.9 | 1.95 | 1.23 | 1.97 | 2 | -- | 0.534 | 22.3 | 59.8 | 10 | -- | -- |
| 216.69 | 0.686 | 7.9 | 1.82 | 1.26 | 1.91 | -- | 1.84 | 0.527 | 22.3 | 60.41 | 10 | -- | -- |
| 228.6 | 0.704 | 7.9 | 1.87 | 1.22 | 1.95 | -- | -- | 0.531 | 22.4 | 60.21 | 10 | -- | -- |
| 288.13 | 0.795 | 7.85 | 1.8 | -- | 2.45 | -- | 1.84 | 0.563 | -- | 61.76 | 6 | -- | -- |
| 286.92 | 0.794 | 7.92 | 1.94 | 2.27 | -- | 1.98 | -- | 0.438 | 0.496 | -- | -- | -- | -- |
| 303.67 | 0.816 | 7.92 | 1.86 | 2.27 | -- | -- | -- | 0.427 | 0.588 | -- | -- | -- | -- |
| 298.96 | 0.809 | 7.86 | 1.86 | -- | 2.48 | -- | -- | 0.58 | -- | 62.22 | 5 | -- | -- |
| 320.06 | 0.833 | 7.94 | -- | 1.23 | 1.94 | -- | -- | 0.327 | 22.5 | 60.98 | 8 | -- | -- |
| 625.65 | 1.17 | 7.88 | 1.94 | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
| 395.23 | 0.93 | 7.97 | -- | 2.29 | -- | -- | -- | 0.22 | 0.628 | -- | -- | -- | -- |
| 389.69 | 0.922 | 7.9 | -- | -- | 2.51 | -- | -- | 0.377 | -- | 62.36 | 5 | -- | -- |
| 725.29 | 1.26 | 7.93 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.62 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 5 | 204.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 11 | 205.57 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 12 | 205.64 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 20 | 206.59 | humidity | 60.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 41 | 208.77 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 43 | 208.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 44 | 209.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 45 | 209.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 47 | 209.51 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 55 | 209.84 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 58 | 210.04 | humidity | 60.0 | 10 | > th | dose dependent | no | NA | NA |
| 61 | 210.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 63 | 210.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 70 | 210.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 82 | 211.21 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 83 | 211.22 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 95 | 212.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 99 | 212.39 | temperature | 20.0 | 30 | > th | dose dependent | no | NA | NA |
| 106 | 212.75 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 109 | 212.86 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 110 | 212.94 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 118 | 213.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 128 | 213.40 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 153 | 214.28 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 171 | 214.77 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 178 | 214.92 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 188 | 215.04 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 21 |
| 190 | 215.07 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 237 | 216.13 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 260 | 216.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 261 | 216.65 | humidity | 80.0 | 10 | > th | dose independent | sin | 22 | NA |
| 272 | 216.79 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 280 | 216.86 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 282 | 216.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 283 | 216.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 310 | 217.41 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 311 | 217.41 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 318 | 217.51 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 320 | 217.57 | humidity | 90.0 | 10 | < th | dose dependent | no | NA | NA |
| 356 | 218.01 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 357 | 218.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 362 | 218.07 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 363 | 218.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 369 | 218.12 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 380 | 218.17 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 385 | 218.21 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 386 | 218.21 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 391 | 218.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 398 | 218.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 399 | 218.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 10 |
| 401 | 218.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 402 | 218.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 405 | 218.30 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 411 | 218.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 442 | 218.67 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 474 | 218.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 475 | 218.99 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 535 | 219.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 10 |
| 552 | 219.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 12 |
| 563 | 219.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 565 | 219.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 12 |
| 580 | 219.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 14 |
| 635 | 219.83 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 660 | 219.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 675 | 220.07 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 680 | 220.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 706 | 220.31 | humidity | 90.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 714 | 220.35 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 728 | 220.42 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 820 | 221.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 866 | 221.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 898 | 221.39 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 20 | NA |
| 903 | 221.42 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 904 | 221.42 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 910 | 221.45 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 6 |
| 929 | 221.53 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 20 | NA |
| 930 | 221.53 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 20 | NA |
| 941 | 221.59 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 955 | 221.67 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 961 | 221.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 965 | 221.71 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |