Os12g0199200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0199200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.71 | 0.706 | 4.26 | -2.04 | 0.295 | 0.911 | 0.345 | -0.995 | -0.159 | 19 | 18.8 | 5922 | -- | -- |
| 225.57 | 0.699 | 4.22 | -1.84 | 0.278 | 1.17 | 0.369 | -- | -0.106 | 18.8 | 12.32 | 6093 | -- | -- |
| 225.99 | 0.7 | 4.25 | -2.03 | 0.297 | 0.927 | -- | -0.889 | -0.152 | 18.9 | 18.2 | 5922 | -- | -- |
| 225.83 | 0.7 | 4.22 | -1.85 | 0.288 | 1.16 | -- | -- | -0.101 | 18.9 | 11.68 | 6036 | -- | -- |
| 229.6 | 0.706 | 4.22 | -1.94 | -- | 1.12 | -- | -0.406 | -0.131 | -- | 12.09 | 6233 | -- | -- |
| 248.34 | 0.739 | 4.16 | -1.28 | 0.289 | -- | 0.382 | -- | 0.165 | 19.3 | -- | -- | -- | -- |
| 248.73 | 0.739 | 4.16 | -1.29 | 0.291 | -- | -- | -- | 0.165 | 19.2 | -- | -- | -- | -- |
| 229.73 | 0.706 | 4.21 | -1.87 | -- | 1.18 | -- | -- | -0.115 | -- | 9.072 | 6293 | -- | -- |
| 286.07 | 0.788 | 4.1 | -- | 0.304 | 0.45 | -- | -- | 0.393 | 18.6 | 30.62 | 2030 | -- | -- |
| 253.19 | 0.744 | 4.15 | -1.29 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 292.38 | 0.8 | 4.12 | -- | 0.305 | -- | -- | -- | 0.309 | 18.9 | -- | -- | -- | -- |
| 290.16 | 0.793 | 4.1 | -- | -- | 0.471 | -- | -- | 0.388 | -- | 30.18 | 2044 | -- | -- |
| 297.25 | 0.805 | 4.12 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 5 | 225.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 7 | 225.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 15 | 225.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 19 | 225.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 22 | 225.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 27 | 226.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 35 | 226.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 49 | 226.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 50 | 226.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 58 | 226.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 63 | 226.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 67 | 226.20 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 70 | 226.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 71 | 226.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 78 | 226.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 122 | 226.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 130 | 226.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 156 | 226.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 160 | 226.35 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 161 | 226.36 | atmosphere | 995 | 43200 | > th | dose independent | sin | 0 | NA |
| 163 | 226.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 166 | 226.36 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 170 | 226.37 | atmosphere | 995 | 43200 | > th | dose independent | sin | 20 | NA |
| 172 | 226.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 195 | 226.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 212 | 226.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 224 | 226.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 250 | 226.44 | atmosphere | 995 | 43200 | < th | dose independent | sin | 20 | NA |
| 288 | 226.47 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 293 | 226.48 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 303 | 226.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 313 | 226.49 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 320 | 226.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 359 | 226.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 389 | 226.57 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 412 | 226.59 | atmosphere | 995 | 43200 | < th | dose independent | sin | 0 | NA |
| 517 | 226.66 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 566 | 226.69 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 820 | 226.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 886 | 226.89 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |