Os12g0199100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0199100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.12 | 0.479 | 6.5 | 0.445 | 0.754 | 0.271 | 0.194 | 5.62 | 0.475 | 0.89 | 21.29 | 4294 | -- | -- |
| 117.77 | 0.505 | 6.67 | -1.14 | 0.721 | 0.723 | 0.302 | -- | 0.267 | 1.01 | 30.21 | 3043 | -- | -- |
| 104.09 | 0.475 | 6.5 | 0.511 | 0.743 | 0.191 | -- | 5.97 | 0.493 | 0.842 | 22.22 | 4193 | -- | -- |
| 117.23 | 0.504 | 6.67 | -1.17 | 0.734 | 0.775 | -- | -- | 0.264 | 0.901 | 30.6 | 4160 | -- | -- |
| 137.01 | 0.545 | 6.5 | 0.421 | -- | 0.37 | -- | 5.88 | 0.465 | -- | 22.19 | 3949 | -- | -- |
| 136.56 | 0.548 | 6.7 | -0.949 | 0.796 | -- | 0.344 | -- | 0.133 | 1.03 | -- | -- | -- | -- |
| 137.04 | 0.548 | 6.7 | -0.961 | 0.795 | -- | -- | -- | 0.131 | 0.963 | -- | -- | -- | -- |
| 149.49 | 0.569 | 6.66 | -1.15 | -- | 0.887 | -- | -- | 0.297 | -- | 30.7 | 3999 | -- | -- |
| 150.16 | 0.571 | 6.65 | -- | 0.73 | 0.553 | -- | -- | 0.348 | 0.856 | 30.6 | 4235 | -- | -- |
| 176.36 | 0.621 | 6.69 | -0.931 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 161.39 | 0.594 | 6.68 | -- | 0.779 | -- | -- | -- | 0.238 | 0.91 | -- | -- | -- | -- |
| 182.56 | 0.629 | 6.64 | -- | -- | 0.684 | -- | -- | 0.382 | -- | 30.7 | 3988 | -- | -- |
| 199.24 | 0.659 | 6.67 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.80 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 2 | 101.88 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 4 | 101.93 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 6 | 102.10 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 7 | 102.13 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 8 | 102.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 8 |
| 11 | 102.22 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 18 | 102.34 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 19 | 102.36 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 22 | 102.41 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 38 | 102.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 39 | 102.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 42 | 102.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 49 | 102.74 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 53 | 102.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 59 | 102.84 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 69 | 103.00 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 115 | 103.47 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 120 | 103.54 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 141 | 103.69 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 170 | 103.87 | wind | 5.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 240 | 104.09 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 242 | 104.10 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 298 | 104.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 301 | 104.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 309 | 104.33 | wind | 5.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 311 | 104.34 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 313 | 104.35 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 324 | 104.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 329 | 104.41 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 348 | 104.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 357 | 104.47 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 396 | 104.61 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 415 | 104.62 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 21 |
| 429 | 104.66 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 446 | 104.68 | temperature | 20.0 | 4320 | > th | dose dependent | no | NA | NA |
| 463 | 104.71 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 464 | 104.71 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 466 | 104.72 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 479 | 104.74 | temperature | 25.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 556 | 104.89 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 561 | 104.90 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 580 | 104.93 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 584 | 104.93 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 609 | 104.96 | temperature | 25.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 610 | 104.96 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 615 | 104.97 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 692 | 105.07 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 715 | 105.10 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 721 | 105.12 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 744 | 105.17 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 886 | 105.46 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 889 | 105.47 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 926 | 105.55 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 934 | 105.57 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 949 | 105.60 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 1000 | 105.70 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |