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Os12g0199000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Agglutinin alpha chain (MPA).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.71 (0.0621) R2 : 0.465
β1 : 1.73 (0.227) R2dD : 0.0873 R2D : 0.0048
β2 : 1.88 (0.143) R2dC : 0.206 R2C : 0.21
β3 : -1.81 (0.395) R2dE : 0.075 R2E : -0.205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -18.7 (1.8) R2dD*E : 0.385 R2D*E : 0.0902
γ1 : 0.592 (0.119) R2dN8 : 0.0399 R2N8 : 0.0226
σ : 1.03
deviance : 487.7
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_____
C
peak time of C : 4.76
E
wheather : wind
threshold : 8.975
memory length : 4323
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 8.87

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
473.01 1.02 8.72 1.65 1.83 -1.86 -2.63 -19.6 0.574 4.65 8.99 4326 15 8.9
537.35 1.08 8.4 2.51 1.84 -3.57 -1.97 -- 0.976 4.91 2.9 47520 13.8 12
487.7 1.03 8.71 1.73 1.88 -1.81 -- -18.7 0.592 4.76 8.975 4323 15 8.87
529.37 1.07 8.36 2.71 1.88 -3.59 -- -- 0.999 5.01 2.9 47520 14.1 13.3
660.36 1.2 8.39 1.26 -- -1.36 -- -0.249 1 -- 8.975 4323 15 8.87
631.85 1.18 8.39 1.18 1.91 -- -0.696 -- 0.848 5.03 -- -- -- --
633.03 1.18 8.39 1.18 1.91 -- -- -- 0.852 5.08 -- -- -- --
649.98 1.19 8.39 1.21 -- -1.36 -- -- 1 -- 21.35 4320 15 8.99
646 1.18 8.41 -- 1.95 -1.41 -- -- 0.731 5.03 2.5 47520 14.4 13.1
823.45 1.34 8.41 1.25 -- -- -- -- 0.9 -- -- -- -- --
669.65 1.21 8.42 -- 1.93 -- -- -- 0.721 5.06 -- -- -- --
690.96 1.22 8.39 -- -- -1.37 -- -- 0.954 -- 21.66 4320 15 8.99
864.47 1.37 8.44 -- -- -- -- -- 0.762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 475.04 wind 1 43200 < th dose dependent rect. 2 1
2 481.28 temperature 20 270 > th dose dependent rect. 12 8
6 486.32 wind 7 4320 > th dose dependent rect. 15 12
7 486.52 wind 9 4320 < th dose independent rect. 15 9
11 487.14 wind 7 4320 > th dose dependent rect. 15 9
12 487.45 wind 9 4320 < th dose independent rect. 15 12
32 491.05 wind 7 4320 > th dose dependent rect. 17 5
41 491.82 wind 7 4320 > th dose independent rect. 17 5
50 492.55 wind 9 4320 > th dose independent rect. 15 11
61 492.91 wind 9 4320 > th dose independent rect. 15 9
73 493.32 wind 7 4320 < th dose independent rect. 18 3
76 493.91 wind 1 43200 < th dose independent rect. 8 2
79 494.12 atmosphere 995 43200 < th dose independent rect. 14 8
91 494.98 atmosphere 995 43200 < th dose dependent rect. 15 7
95 495.29 temperature 20 270 > th dose dependent rect. 12 20
96 495.40 wind 7 4320 > th dose independent rect. 19 1
105 495.86 atmosphere 995 43200 > th dose independent rect. 15 2
129 496.72 atmosphere 995 43200 < th dose independent rect. 15 2
131 496.76 wind 9 43200 > th dose dependent rect. 12 1
137 496.89 wind 7 4320 < th dose independent rect. 19 1
139 496.98 atmosphere 995 43200 > th dose independent rect. 14 8
142 497.07 atmosphere 995 43200 < th dose dependent rect. 15 4
145 497.11 atmosphere 995 43200 > th dose independent rect. 14 5
170 498.41 wind 1 43200 < th dose dependent rect. 8 5
179 499.26 atmosphere 995 43200 < th dose independent rect. 14 5
183 499.34 wind 7 4320 > th dose dependent rect. 15 18
192 499.75 wind 1 43200 > th dose independent rect. 8 2
193 499.85 temperature 20 270 > th dose dependent sin 20 NA
196 499.92 wind 1 43200 < th dose dependent rect. 8 3
208 500.57 wind 7 4320 > th dose dependent sin 14 NA
213 501.00 wind 9 4320 < th dose independent sin 13 NA
261 503.80 wind 9 4320 > th dose independent sin 13 NA
265 503.93 wind 7 4320 > th dose dependent rect. 19 1
293 505.24 temperature 20 10 > th dose dependent rect. 15 5
303 505.67 temperature 15 270 > th dose dependent rect. 24 19
306 505.89 wind 1 43200 < th dose independent rect. 2 1
308 505.92 temperature 10 270 > th dose dependent rect. 1 17
413 510.24 temperature 20 10 > th dose dependent rect. 15 7
423 510.72 wind 9 4320 > th dose dependent rect. 15 3
445 511.21 wind 9 4320 < th dose independent rect. 15 3
451 511.34 wind 7 4320 > th dose dependent rect. 17 1
480 512.16 temperature 25 270 > th dose independent rect. 13 5
498 512.78 wind 1 43200 > th dose independent rect. 6 6
525 513.41 wind 9 43200 > th dose dependent rect. 15 1
529 513.57 wind 1 43200 > th dose independent rect. 2 1
539 513.93 wind 9 43200 > th dose independent rect. 12 1
560 514.65 humidity 80 14400 > th dose dependent rect. 22 1
561 514.66 wind 9 4320 > th dose independent rect. 15 3
591 515.37 temperature 20 270 > th dose independent rect. 24 18
599 515.51 humidity 60 4320 < th dose dependent rect. 15 3
607 515.65 humidity 90 90 < th dose dependent rect. 15 5
650 516.37 wind 9 4320 > th dose independent rect. 17 1
710 517.44 wind 9 43200 < th dose independent rect. 12 2
757 517.98 humidity 90 270 < th dose dependent rect. 13 5
765 518.21 temperature 30 270 < th dose independent rect. 8 15
777 518.45 wind 9 43200 > th dose dependent rect. 13 20
782 518.52 wind 3 43200 < th dose dependent rect. 5 12
785 518.58 humidity 50 4320 < th dose independent rect. 15 1
801 518.86 radiation 10 4320 > th dose dependent rect. 17 13
807 519.01 radiation 10 4320 > th dose dependent rect. 17 1
837 519.29 radiation 30 14400 < th dose independent rect. 16 1
892 520.27 atmosphere 995 43200 > th dose independent sin 20 NA
928 520.95 wind 5 14400 > th dose independent rect. 23 1
935 521.07 wind 9 43200 > th dose dependent rect. 20 1
966 521.58 temperature 20 90 > th dose independent rect. 14 19
976 521.76 radiation 30 14400 < th dose independent rect. 16 10
978 521.78 radiation 30 14400 < th dose independent rect. 16 14
989 521.89 humidity 90 14400 < th dose independent rect. 22 9
998 522.03 temperature 25 270 > th dose independent rect. 14 3
999 522.03 wind 1 43200 < th dose dependent rect. 11 2