Os12g0198500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0198500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.33 | 0.356 | 8.22 | -0.961 | 0.522 | -1.23 | 0.539 | 0.993 | -0.0658 | 19.5 | 29.5 | 95 | -- | -- |
| 58.39 | 0.356 | 8.2 | -0.809 | 0.497 | -1.27 | 0.618 | -- | -0.0353 | 19.7 | 28.81 | 110 | -- | -- |
| 57.99 | 0.355 | 8.21 | -0.964 | 0.528 | -1.2 | -- | 1.01 | -0.0553 | 19.1 | 29.43 | 100 | -- | -- |
| 58.88 | 0.357 | 8.2 | -0.803 | 0.512 | -1.19 | -- | -- | -0.0295 | 18.7 | 27.74 | 160 | -- | -- |
| 67.64 | 0.383 | 8.21 | -1.01 | -- | -1.53 | -- | 0.688 | -0.122 | -- | 29.7 | 274 | -- | -- |
| 78.56 | 0.416 | 8.14 | -0.496 | 0.784 | -- | -0.143 | -- | 0.231 | 17.3 | -- | -- | -- | -- |
| 78.6 | 0.415 | 8.14 | -0.496 | 0.783 | -- | -- | -- | 0.23 | 17.4 | -- | -- | -- | -- |
| 68.12 | 0.384 | 8.2 | -0.89 | -- | -1.53 | -- | -- | -0.092 | -- | 29.46 | 283 | -- | -- |
| 74.04 | 0.401 | 8.17 | -- | 0.586 | -0.876 | -- | -- | 0.123 | 18.4 | 28.48 | 113 | -- | -- |
| 110.58 | 0.491 | 8.13 | -0.523 | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
| 85.09 | 0.431 | 8.13 | -- | 0.792 | -- | -- | -- | 0.285 | 17.4 | -- | -- | -- | -- |
| 87.36 | 0.435 | 8.16 | -- | -- | -1.24 | -- | -- | 0.0597 | -- | 29.71 | 273 | -- | -- |
| 117.78 | 0.507 | 8.12 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.71 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 5 | 52.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 17 | 53.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 21 | 53.65 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 29 | 53.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 38 | 54.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 67 | 54.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 84 | 55.37 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 140 | 56.01 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 151 | 56.11 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 168 | 56.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 169 | 56.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 172 | 56.32 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 193 | 56.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 199 | 56.58 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 205 | 56.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 206 | 56.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 214 | 56.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 231 | 56.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 254 | 57.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 273 | 57.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 286 | 57.20 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 295 | 57.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 308 | 57.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 332 | 57.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 335 | 57.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 340 | 57.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 367 | 57.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 369 | 57.49 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 375 | 57.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 392 | 57.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 401 | 57.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 413 | 57.66 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 417 | 57.67 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 418 | 57.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 432 | 57.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 442 | 57.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 445 | 57.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 457 | 57.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 458 | 57.77 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 472 | 57.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 475 | 57.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 477 | 57.79 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 519 | 57.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 525 | 57.85 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 558 | 57.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 567 | 57.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 580 | 57.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 615 | 57.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 640 | 57.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 672 | 58.01 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 702 | 58.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 741 | 58.09 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 771 | 58.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 818 | 58.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 819 | 58.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 821 | 58.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 891 | 58.21 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 923 | 58.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 937 | 58.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 990 | 58.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |