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Os12g0198200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.72 (0.0262) R2 : 0.655
β1 : 0.853 (0.0959) R2dD : 0.062 R2D : 0.0357
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.46 (0.0528) R2dE : 0.575 R2E : 0.566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.374 (0.0559) R2dN8 : 0.0454 R2N8 : 0.0164
σ : 0.49
deviance : 110.69
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 17.34
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.52 0.48 9.73 0.841 0.536 1.1 0.576 -0.852 0.365 22.6 20 10 -- --
105.34 0.478 9.73 0.842 0.563 1.07 -0.285 -- 0.364 22.9 20.14 9 -- --
104.82 0.477 9.74 0.838 0.541 1.09 -- -0.403 0.362 22.8 20.06 9 -- --
105.71 0.479 9.73 0.847 0.576 1.06 -- -- 0.365 22.8 20 9 -- --
109.58 0.488 9.72 0.839 -- 1.46 -- -0.45 0.373 -- 17.54 9 -- --
125.28 0.525 9.76 0.808 1.64 -- -0.252 -- 0.351 23.6 -- -- -- --
125.55 0.525 9.76 0.818 1.64 -- -- -- 0.352 23.6 -- -- -- --
110.69 0.49 9.72 0.853 -- 1.46 -- -- 0.374 -- 17.34 9 -- --
124.86 0.52 9.75 -- 0.535 1.11 -- -- 0.302 22.7 19.86 9 -- --
295.49 0.803 9.72 0.863 -- -- -- -- 0.37 -- -- -- -- --
143.19 0.56 9.78 -- 1.65 -- -- -- 0.261 23.6 -- -- -- --
129.7 0.53 9.74 -- -- 1.45 -- -- 0.273 -- 16.7 7 -- --
315.15 0.829 9.74 -- -- -- -- -- 0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.84 radiation 10.0 10 < th dose dependent rect. 6 14
2 94.93 radiation 10.0 10 < th dose dependent sin 22 NA
5 96.34 radiation 10.0 90 < th dose dependent rect. 5 15
34 99.01 radiation 10.0 10 < th dose independent rect. 7 13
42 99.31 radiation 30.0 90 < th dose dependent rect. 15 19
49 99.75 radiation 30.0 90 < th dose dependent rect. 13 21
61 100.24 radiation 10.0 10 < th dose independent sin 21 NA
84 100.70 radiation 10.0 10 > th dose independent rect. 9 9
107 100.88 radiation 10.0 10 > th dose independent rect. 9 23
108 100.89 radiation 10.0 90 < th dose independent rect. 5 15
112 100.95 radiation 30.0 4320 < th dose dependent rect. 21 8
133 101.31 radiation 10.0 30 > th dose independent rect. 9 7
153 101.50 temperature 10.0 270 > th dose dependent rect. 1 8
164 101.66 radiation 30.0 270 < th dose independent rect. 15 16
172 101.79 radiation 40.0 10 < th dose dependent rect. 16 19
182 101.88 humidity 50.0 30 > th dose dependent rect. 5 15
189 101.99 radiation 10.0 10 > th dose independent sin 21 NA
222 102.33 humidity 50.0 90 > th dose independent rect. 16 17
226 102.41 atmosphere 995.0 270 > th dose independent rect. 15 16
231 102.45 wind 7.0 270 < th dose independent rect. 19 8
261 102.71 atmosphere 995.0 270 > th dose independent rect. 3 16
268 102.78 radiation 10.0 10 < th dose independent rect. 13 7
279 102.89 radiation 30.0 10 < th dose dependent rect. 12 23
285 102.97 radiation 30.0 270 < th dose independent rect. 13 6
294 103.04 radiation 40.0 270 < th dose dependent rect. 15 3
304 103.14 wind 1.0 270 > th dose independent rect. 19 8
310 103.17 humidity 80.0 270 > th dose independent rect. 1 7
311 103.17 radiation 20.0 10 < th dose dependent rect. 1 23
315 103.19 radiation 10.0 90 < th dose independent rect. 12 8
316 103.19 precipitation 0.1 270 < th dose independent rect. 19 8
317 103.19 precipitation 0.1 270 < th dose dependent rect. 19 8
328 103.26 temperature 15.0 270 > th dose independent rect. 3 16
353 103.48 humidity 50.0 90 > th dose dependent rect. 16 17
366 103.55 humidity 50.0 30 > th dose dependent rect. 16 19
370 103.58 precipitation 0.1 270 < th dose independent rect. 7 8
371 103.58 precipitation 0.1 270 < th dose dependent rect. 7 8
387 103.64 radiation 20.0 270 < th dose independent rect. 15 3
390 103.64 temperature 10.0 270 > th dose independent rect. 7 8
391 103.64 atmosphere 1015.0 270 < th dose independent rect. 7 8
392 103.64 temperature 10.0 270 > th dose independent rect. 15 16
395 103.66 wind 9.0 270 < th dose independent rect. 3 16
400 103.68 radiation 30.0 90 < th dose dependent rect. 15 5
404 103.70 atmosphere 995.0 270 > th dose independent rect. 14 6
406 103.70 humidity 50.0 10 > th dose dependent rect. 16 4
439 103.86 radiation 1.0 270 > th dose independent rect. 7 8
447 103.88 radiation 1.0 270 < th dose dependent rect. 19 8
450 103.89 temperature 10.0 270 > th dose independent rect. 19 8
451 103.89 temperature 30.0 270 < th dose independent rect. 19 8
452 103.89 humidity 50.0 270 > th dose independent rect. 19 8
454 103.89 atmosphere 995.0 270 > th dose independent rect. 19 8
456 103.89 radiation 1.0 270 < th dose independent rect. 19 8
462 103.89 atmosphere 1015.0 270 < th dose independent rect. 3 16
469 103.90 precipitation 0.1 270 < th dose independent rect. 17 23
470 103.90 precipitation 0.1 270 < th dose dependent rect. 17 23
483 103.96 humidity 50.0 270 > th dose dependent rect. 1 8
501 104.07 precipitation 0.1 270 < th dose independent rect. 20 18
503 104.07 precipitation 0.1 270 < th dose dependent rect. 20 18
524 104.21 radiation 20.0 90 < th dose independent rect. 13 21
560 104.28 wind 9.0 270 < th dose independent rect. 15 16
574 104.34 atmosphere 995.0 90 > th dose independent rect. 5 15
577 104.36 radiation 30.0 10 < th dose independent rect. 16 17
598 104.44 precipitation 0.1 270 < th dose independent rect. 9 16
601 104.44 precipitation 0.1 270 < th dose dependent rect. 9 16
604 104.45 radiation 20.0 10 < th dose dependent rect. 3 23
605 104.46 humidity 90.0 270 < th dose independent rect. 20 19
610 104.50 radiation 10.0 1440 < th dose independent rect. 21 8
619 104.55 temperature 20.0 270 > th dose independent rect. 1 7
629 104.58 atmosphere 995.0 270 > th dose independent rect. 7 8
637 104.60 radiation 20.0 10 < th dose dependent rect. 15 23
649 104.63 wind 1.0 270 > th dose independent rect. 7 8
659 104.67 wind 9.0 270 < th dose independent rect. 7 8
662 104.68 precipitation 0.1 270 < th dose independent rect. 19 20
664 104.68 precipitation 0.1 270 < th dose dependent rect. 19 20
685 104.74 humidity 50.0 90 > th dose independent rect. 16 4
709 104.80 radiation 20.0 10 < th dose dependent no NA NA
739 104.89 atmosphere 995.0 270 > th dose independent rect. 15 4
767 104.98 temperature 30.0 30 < th dose independent rect. 16 4
776 105.00 wind 9.0 90 < th dose independent rect. 5 15
820 105.11 temperature 15.0 270 > th dose independent rect. 14 6
821 105.11 atmosphere 1010.0 270 < th dose independent rect. 14 6
827 105.13 wind 1.0 270 > th dose independent rect. 13 7
858 105.22 temperature 10.0 1440 > th dose independent rect. 21 8
861 105.22 temperature 30.0 1440 < th dose independent rect. 21 8
865 105.22 humidity 50.0 1440 > th dose independent rect. 21 8
871 105.22 atmosphere 995.0 1440 > th dose independent rect. 21 8
884 105.22 temperature 10.0 1440 > th dose independent rect. 5 16
903 105.27 humidity 70.0 10 > th dose independent rect. 5 15
908 105.28 radiation 20.0 270 < th dose independent rect. 16 1
921 105.31 temperature 10.0 270 > th dose independent rect. 20 18
922 105.31 atmosphere 995.0 270 > th dose independent rect. 20 18
927 105.33 humidity 60.0 10 > th dose independent rect. 16 4
930 105.34 radiation 10.0 10 < th dose independent rect. 3 17
977 105.42 atmosphere 1015.0 90 < th dose independent rect. 5 15
1000 105.48 temperature 30.0 30 < th dose independent rect. 16 17