Os12g0197600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0197600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.99 | 0.399 | 10.4 | -0.904 | 1.07 | -1.66 | 0.772 | -1.05 | 0.456 | 0.45 | 23.76 | 57 | -- | -- |
| 73.23 | 0.399 | 10.4 | -1.04 | 1.06 | -1.5 | 0.531 | -- | 0.41 | 0.433 | 24.14 | 57 | -- | -- |
| 73.99 | 0.401 | 10.4 | -0.992 | 1.07 | -1.57 | -- | -0.433 | 0.441 | 0.382 | 23.88 | 46 | -- | -- |
| 74.18 | 0.401 | 10.4 | -1.06 | 1.06 | -1.5 | -- | -- | 0.418 | 0.405 | 24.1 | 57 | -- | -- |
| 110.94 | 0.491 | 10.4 | -1.16 | -- | -1.56 | -- | 0.0391 | 0.321 | -- | 28.1 | 900 | -- | -- |
| 104.54 | 0.479 | 10.3 | -0.697 | 0.831 | -- | 0.482 | -- | 0.665 | 0.216 | -- | -- | -- | -- |
| 105.54 | 0.481 | 10.3 | -0.715 | 0.83 | -- | -- | -- | 0.663 | 0.165 | -- | -- | -- | -- |
| 110.9 | 0.49 | 10.4 | -1.15 | -- | -1.54 | -- | -- | 0.335 | -- | 28.5 | 910 | -- | -- |
| 100.85 | 0.47 | 10.4 | -- | 0.996 | -1.08 | -- | -- | 0.595 | 0.248 | 24.05 | 50 | -- | -- |
| 148.87 | 0.57 | 10.3 | -0.688 | -- | -- | -- | -- | 0.675 | -- | -- | -- | -- | -- |
| 119.02 | 0.51 | 10.3 | -- | 0.82 | -- | -- | -- | 0.743 | 0.117 | -- | -- | -- | -- |
| 140.58 | 0.552 | 10.3 | -- | -- | -1.07 | -- | -- | 0.559 | -- | 28.6 | 875 | -- | -- |
| 161.37 | 0.593 | 10.3 | -- | -- | -- | -- | -- | 0.752 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 21 | 72.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 48 | 73.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 50 | 73.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 52 | 73.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 56 | 73.18 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 58 | 73.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 65 | 73.30 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 68 | 73.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 70 | 73.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 71 | 73.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 75 | 73.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 83 | 73.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 96 | 73.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 128 | 73.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 186 | 74.53 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 246 | 75.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 288 | 75.53 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 350 | 76.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 354 | 76.46 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 470 | 77.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 588 | 78.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 601 | 78.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 765 | 79.77 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 891 | 80.62 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 967 | 81.02 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |