FiT-DB / Search/ Help/ Sample detail

Os12g0197100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoribosylglycinamide synthetase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.93 (0.0346) R2 : 0.477
β1 : -0.722 (0.127) R2dD : 0.0391 R2D : -0.0244
β2 : 0.788 (0.0892) R2dC : 0.103 R2C : 0.166
β3 : 2.6 (0.229) R2dE : 0.174 R2E : 0.221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.685 (0.0738) R2dN8 : 0.132 R2N8 : 0.065
σ : 0.646
deviance : 192.55
__
_____
C
peak time of C : 22.4
E
wheather : humidity
threshold : 60.11
memory length : 144
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.45 0.636 6.93 -0.75 0.873 2.47 -0.379 4.06 -0.668 22.3 60.06 83 18 2.02
192.57 0.646 6.93 -0.762 0.774 2.6 0.0901 -- -0.687 22.3 60.07 144 18 1.98
183.93 0.632 6.93 -0.746 0.88 2.47 -- 3.83 -0.669 22.2 60.54 81 18.1 1.97
192.55 0.646 6.93 -0.722 0.788 2.6 -- -- -0.685 22.4 60.11 144 18 2
213.34 0.68 6.92 -0.694 -- 2.69 -- 3.29 -0.739 -- 56.65 61 18.1 3.29
243.39 0.731 6.93 -0.704 1.21 -- 0.35 -- -0.635 21.4 -- -- -- --
243.82 0.731 6.93 -0.718 1.21 -- -- -- -0.636 21.4 -- -- -- --
211.61 0.678 6.89 -0.564 -- 2 -- -- -0.676 -- 52.48 79 17.9 5.27
206.37 0.669 6.91 -- 0.776 2.64 -- -- -0.61 22.3 59.75 144 18 2
329.45 0.848 6.9 -0.71 -- -- -- -- -0.64 -- -- -- -- --
257.39 0.75 6.91 -- 1.21 -- -- -- -0.557 21.4 -- -- -- --
223.3 0.696 6.9 -- -- 1.94 -- -- -0.658 -- 49.58 62 18 5.42
342.75 0.864 6.88 -- -- -- -- -- -0.562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.66 humidity 60.0 90 > th dose dependent rect. 18 2
9 187.39 humidity 70.0 90 > th dose independent rect. 18 2
18 189.22 temperature 30.0 90 < th dose dependent rect. 18 3
22 189.71 temperature 10.0 270 > th dose dependent rect. 20 10
29 191.03 temperature 30.0 90 < th dose independent rect. 18 3
30 191.03 radiation 1.0 720 < th dose dependent rect. 14 6
37 192.05 humidity 70.0 10 > th dose independent rect. 19 1
41 192.40 radiation 1.0 720 < th dose dependent rect. 17 2
45 192.87 humidity 50.0 270 > th dose dependent rect. 16 4
47 192.95 temperature 30.0 90 < th dose dependent rect. 18 17
51 193.25 radiation 1.0 720 < th dose dependent rect. 10 10
64 194.02 temperature 30.0 90 < th dose dependent rect. 18 15
70 194.52 radiation 1.0 720 < th dose independent rect. 17 2
81 195.00 temperature 15.0 1440 > th dose independent rect. 20 1
82 195.02 radiation 10.0 4320 < th dose dependent rect. 20 1
89 195.23 radiation 1.0 270 < th dose independent rect. 16 4
91 195.26 humidity 60.0 270 > th dose independent rect. 16 4
97 195.31 temperature 30.0 1440 < th dose independent rect. 20 1
101 195.31 humidity 50.0 1440 > th dose independent rect. 20 1
107 195.31 atmosphere 995.0 1440 > th dose independent rect. 20 1
111 195.31 radiation 1.0 1440 < th dose independent rect. 20 1
131 195.31 temperature 10.0 1440 > th dose independent rect. 21 23
145 195.49 radiation 1.0 720 < th dose independent rect. 14 6
187 196.62 radiation 1.0 720 < th dose dependent rect. 14 14
189 196.68 radiation 1.0 720 < th dose dependent rect. 14 16
192 196.76 radiation 1.0 720 < th dose dependent sin 14 NA
210 197.27 radiation 1.0 720 < th dose independent rect. 9 11
214 197.38 temperature 30.0 270 < th dose independent rect. 16 4
225 197.73 temperature 30.0 720 < th dose dependent rect. 18 1
235 198.02 wind 9.0 90 < th dose dependent rect. 19 1
252 198.49 temperature 15.0 90 > th dose independent rect. 20 23
266 199.01 wind 7.0 90 < th dose independent rect. 19 1
268 199.04 temperature 10.0 90 > th dose independent rect. 19 1
273 199.04 atmosphere 995.0 90 > th dose independent rect. 19 1
274 199.04 atmosphere 1010.0 90 < th dose independent rect. 19 1
276 199.04 radiation 1.0 90 < th dose independent rect. 19 1
289 199.11 wind 1.0 90 > th dose independent rect. 19 1
293 199.17 radiation 40.0 1440 < th dose dependent rect. 18 5
299 199.23 radiation 1.0 720 < th dose independent rect. 14 14
310 199.45 radiation 1.0 720 < th dose dependent rect. 10 18
318 199.53 radiation 1.0 720 < th dose independent sin 14 NA
338 199.83 precipitation 0.1 90 < th dose independent rect. 20 23
339 199.83 precipitation 0.1 90 < th dose dependent rect. 20 23
342 199.92 wind 9.0 90 < th dose dependent rect. 18 3
389 200.06 radiation 1.0 720 < th dose independent rect. 14 16
399 200.18 wind 9.0 90 < th dose independent rect. 20 23
412 200.35 temperature 30.0 270 < th dose dependent rect. 16 17
414 200.37 humidity 50.0 90 > th dose dependent rect. 18 5
445 201.06 atmosphere 995.0 90 > th dose dependent rect. 19 1
451 201.11 temperature 30.0 90 < th dose independent rect. 18 5
457 201.21 radiation 1.0 720 < th dose independent rect. 17 11
479 201.52 temperature 10.0 90 > th dose dependent rect. 21 21
490 201.69 radiation 1.0 720 < th dose independent rect. 9 19
515 201.96 radiation 1.0 720 < th dose dependent rect. 22 23
520 202.00 temperature 25.0 720 < th dose independent rect. 14 14
523 202.02 temperature 25.0 720 < th dose independent sin 16 NA
533 202.15 temperature 30.0 90 < th dose independent rect. 18 15
540 202.23 temperature 15.0 90 > th dose independent rect. 21 21
554 202.34 humidity 60.0 90 > th dose independent rect. 18 5
561 202.39 radiation 1.0 90 < th dose dependent sin 20 NA
577 202.51 radiation 1.0 720 < th dose dependent rect. 5 23
596 202.70 wind 9.0 90 < th dose independent rect. 18 3
599 202.70 precipitation 0.1 90 < th dose independent rect. 21 21
600 202.70 precipitation 0.1 90 < th dose dependent rect. 21 21
602 202.72 temperature 10.0 90 > th dose independent rect. 18 3
605 202.72 atmosphere 1010.0 90 < th dose independent rect. 18 3
612 202.74 atmosphere 995.0 90 > th dose independent rect. 18 3
653 203.10 temperature 30.0 90 < th dose independent rect. 18 17
667 203.21 temperature 25.0 720 < th dose independent rect. 11 17
686 203.33 radiation 1.0 90 < th dose independent rect. 18 5
714 203.47 wind 9.0 90 < th dose independent rect. 21 21
800 203.98 humidity 50.0 90 > th dose dependent rect. 18 17
862 204.38 radiation 1.0 720 > th dose independent sin 14 NA
871 204.45 precipitation 0.1 90 < th dose independent rect. 23 19
873 204.45 precipitation 0.1 90 < th dose dependent rect. 23 19
881 204.53 humidity 60.0 90 > th dose independent rect. 18 15
889 204.56 radiation 40.0 90 < th dose dependent rect. 21 21
897 204.61 radiation 1.0 720 < th dose dependent rect. 3 23
898 204.62 wind 1.0 90 > th dose independent rect. 18 3
905 204.64 radiation 1.0 720 > th dose independent rect. 10 22
925 204.83 radiation 1.0 720 < th dose dependent no NA NA