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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0196300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0457) R2 : 0.00438
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0961) R2dN8 : 0.00565 R2N8 : 0.00438
σ : 0.86
deviance : 339.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
327.33 0.85 3.18 -0.432 0.0461 1.48 0.876 -7.54 -0.115 2.94 999.5 1690 -- --
328.02 0.844 3.11 -0.00714 0.0598 1.58 0.884 -- -0.124 2.88 991.5 2013 -- --
329.8 0.846 3.18 -0.419 0.0557 1.46 -- -7.59 -0.122 2.86 999.3 1802 -- --
330.41 0.847 3.11 -0.0213 0.0635 1.72 -- -- -0.125 3.19 991.7 2265 -- --
329.97 0.846 3.18 -0.422 -- 1.47 -- -7.6 -0.12 -- 999.3 1805 -- --
335.73 0.859 3.11 -0.0587 0.0258 -- 0.977 -- -0.14 2.68 -- -- -- --
338.98 0.862 3.11 -0.0832 0.0515 -- -- -- -0.146 6.07 -- -- -- --
330.64 0.847 3.11 -0.0197 -- 1.7 -- -- -0.124 -- 991.8 2316 -- --
330.42 0.847 3.11 -- 0.0643 1.73 -- -- -0.123 3.61 991.8 2432 -- --
339.12 0.86 3.11 -0.0817 -- -- -- -- -0.145 -- -- -- -- --
339.17 0.861 3.11 -- 0.0503 -- -- -- -0.137 6.15 -- -- -- --
330.65 0.847 3.11 -- -- 1.71 -- -- -0.122 -- 991.9 2372 -- --
339.3 0.86 3.11 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.50 precipitation 0.1 1440 > th dose independent rect. 22 1
2 317.50 precipitation 0.1 1440 > th dose dependent rect. 22 1
3 317.93 precipitation 0.1 90 > th dose independent rect. 23 2
4 317.93 wind 5.0 30 > th dose independent rect. 24 6
6 317.93 precipitation 0.1 90 > th dose dependent rect. 23 2
9 317.97 wind 5.0 30 > th dose dependent rect. 24 6
13 318.01 wind 5.0 30 > th dose independent rect. 24 4
15 318.01 wind 5.0 30 > th dose dependent rect. 24 4
27 318.15 wind 5.0 10 > th dose independent rect. 24 2
31 318.15 wind 5.0 10 > th dose dependent rect. 24 2
41 318.55 atmosphere 1000.0 90 < th dose dependent rect. 1 3
52 319.17 wind 5.0 10 > th dose dependent rect. 22 3
54 319.25 atmosphere 1000.0 90 < th dose independent rect. 1 3
57 319.64 atmosphere 1000.0 10 < th dose independent rect. 2 2
60 319.78 atmosphere 1000.0 10 < th dose dependent rect. 2 2
61 319.81 temperature 25.0 30 > th dose dependent rect. 21 1
65 320.01 wind 5.0 10 > th dose dependent rect. 22 8
67 320.03 wind 5.0 10 > th dose dependent rect. 22 6
79 320.28 wind 1.0 270 < th dose dependent rect. 4 1
80 320.30 atmosphere 1000.0 90 < th dose independent rect. 2 1
83 320.33 atmosphere 1000.0 90 < th dose dependent rect. 2 1
94 320.50 radiation 1.0 90 < th dose independent rect. 8 1
97 320.50 radiation 1.0 90 < th dose dependent rect. 8 1
102 320.60 atmosphere 995.0 4320 > th dose independent rect. 21 1
104 320.64 wind 5.0 10 > th dose independent rect. 22 3
134 321.53 atmosphere 1000.0 270 < th dose independent rect. 24 1
139 321.66 atmosphere 1000.0 270 < th dose dependent rect. 24 1
140 321.77 wind 5.0 10 > th dose independent rect. 22 8
171 322.55 radiation 1.0 10 < th dose independent rect. 11 3
179 322.55 radiation 1.0 10 < th dose dependent rect. 11 3
203 322.67 humidity 90.0 90 < th dose independent rect. 20 1
206 322.71 radiation 1.0 10 < th dose independent rect. 13 1
216 322.71 radiation 1.0 10 < th dose dependent rect. 13 1
226 322.74 radiation 40.0 1440 < th dose independent rect. 16 1
230 322.90 atmosphere 995.0 30 > th dose independent rect. 21 23
232 322.94 temperature 20.0 30 < th dose dependent rect. 12 2
235 322.95 temperature 20.0 30 < th dose independent rect. 12 3
238 322.99 wind 1.0 270 < th dose independent rect. 4 1
240 323.07 wind 1.0 90 < th dose independent rect. 2 9
249 323.27 atmosphere 1000.0 90 < th dose dependent rect. 14 1
252 323.31 atmosphere 1000.0 10 < th dose dependent rect. 16 1
274 323.65 atmosphere 995.0 10 > th dose independent sin 6 NA
308 323.85 atmosphere 1005.0 90 > th dose independent rect. 20 1
314 323.94 atmosphere 1005.0 30 > th dose independent rect. 5 1
332 324.11 radiation 40.0 1440 < th dose independent rect. 16 14
348 324.33 wind 9.0 4320 < th dose independent rect. 21 1
359 324.68 radiation 40.0 1440 < th dose independent rect. 16 8
360 324.72 wind 1.0 90 < th dose dependent rect. 2 20
361 324.76 atmosphere 995.0 4320 > th dose independent rect. 5 1
370 324.88 wind 1.0 90 < th dose independent rect. 2 20
371 324.89 atmosphere 995.0 10 < th dose independent sin 6 NA
373 324.89 temperature 30.0 30 > th dose dependent rect. 16 1
377 324.91 atmosphere 995.0 10 < th dose dependent sin 6 NA
379 324.91 atmosphere 995.0 30 < th dose dependent rect. 18 23
381 324.93 atmosphere 995.0 90 < th dose independent rect. 14 1
382 324.93 atmosphere 995.0 10 < th dose independent rect. 15 1
640 324.96 atmosphere 1005.0 30 > th dose dependent rect. 12 2
649 325.06 atmosphere 1005.0 10 > th dose independent rect. 20 2
658 325.16 radiation 40.0 1440 < th dose independent rect. 16 5
668 325.27 atmosphere 995.0 10 > th dose independent rect. 8 12
684 325.50 wind 1.0 90 < th dose independent rect. 2 3
687 325.51 wind 1.0 90 < th dose dependent rect. 2 9
689 325.53 temperature 30.0 10 > th dose dependent rect. 15 3
695 325.59 precipitation 0.1 270 > th dose independent rect. 13 15
714 325.61 temperature 25.0 90 > th dose independent rect. 20 1
715 325.62 wind 5.0 10 < th dose independent rect. 24 1
735 325.79 precipitation 0.1 270 > th dose independent rect. 20 7
736 325.79 precipitation 0.1 270 > th dose dependent rect. 20 7
745 325.86 humidity 70.0 90 > th dose independent rect. 12 1
747 325.87 precipitation 0.1 270 > th dose independent sin 15 NA
757 325.92 atmosphere 995.0 4320 > th dose independent rect. 21 12
759 325.94 atmosphere 995.0 30 > th dose independent rect. 6 14
761 325.96 wind 5.0 30 < th dose dependent rect. 20 1
768 326.00 precipitation 0.1 270 > th dose independent rect. 13 11
813 326.15 wind 9.0 30 < th dose independent rect. 21 23
820 326.16 atmosphere 1005.0 30 > th dose dependent rect. 20 1
826 326.19 humidity 80.0 30 > th dose independent rect. 20 1
839 326.24 precipitation 0.1 270 > th dose independent rect. 18 10
841 326.24 wind 5.0 4320 < th dose dependent rect. 9 4
843 326.25 precipitation 0.1 270 > th dose dependent rect. 18 10
849 326.28 precipitation 0.1 270 < th dose independent sin 14 NA
850 326.28 precipitation 0.1 270 < th dose dependent sin 14 NA
859 326.31 atmosphere 995.0 90 > th dose independent rect. 13 23
860 326.31 temperature 30.0 30 < th dose dependent rect. 20 1
864 326.33 temperature 10.0 1440 > th dose independent rect. 21 1
867 326.33 temperature 30.0 1440 < th dose independent rect. 21 1
871 326.33 humidity 50.0 1440 > th dose independent rect. 21 1
878 326.33 radiation 1.0 1440 < th dose independent rect. 21 1
900 326.33 temperature 10.0 1440 > th dose independent rect. 22 23
909 326.36 wind 7.0 30 < th dose independent rect. 20 1
922 326.39 humidity 60.0 30 > th dose dependent rect. 20 1
944 326.46 wind 1.0 30 > th dose independent rect. 20 1
946 326.46 temperature 10.0 30 > th dose independent rect. 20 1
948 326.46 temperature 30.0 30 < th dose independent rect. 20 1
949 326.46 humidity 50.0 30 > th dose independent rect. 20 1
953 326.46 atmosphere 1010.0 30 < th dose independent rect. 20 1
955 326.46 radiation 1.0 30 < th dose independent rect. 20 1
960 326.46 precipitation 0.1 30 < th dose independent rect. 20 1
961 326.46 temperature 10.0 30 > th dose independent rect. 21 23
962 326.46 wind 5.0 10 < th dose dependent rect. 24 1
963 326.46 radiation 1.0 30 < th dose dependent rect. 20 1
968 326.46 precipitation 0.1 30 < th dose dependent rect. 20 1
976 326.50 atmosphere 995.0 4320 > th dose independent rect. 5 4
977 326.51 radiation 30.0 1440 > th dose independent rect. 16 1
980 326.51 wind 3.0 4320 > th dose independent rect. 9 4
981 326.51 wind 3.0 4320 < th dose independent rect. 9 4
986 326.51 atmosphere 995.0 4320 > th dose independent rect. 1 8
989 326.51 atmosphere 995.0 4320 > th dose independent rect. 21 10
1000 326.52 humidity 60.0 270 < th dose independent rect. 18 1