FiT-DB / Search/ Help/ Sample detail

Os12g0194800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA pseudouridine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.96 (0.0246) R2 : 0.595
β1 : 1.07 (0.0902) R2dD : 0.13 R2D : 0.105
β2 : 1.49 (0.064) R2dC : 0.483 R2C : 0.464
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0526) R2dN8 : 0.0161 R2N8 : -0.00829
σ : 0.463
deviance : 97.84
__
_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.62 0.44 6.98 1.04 1.38 0.753 0.256 1.46 0.156 18.2 5.409 91 -- --
91.84 0.446 6.97 1.07 1.39 0.633 0.28 -- 0.161 18 4.557 92 -- --
87.78 0.436 6.98 1.04 1.38 0.749 -- 1.45 0.158 18.2 5.23 91 -- --
92.01 0.447 6.97 1.07 1.39 0.659 -- -- 0.162 18.1 3.661 92 -- --
142.62 0.556 6.97 0.968 -- 1.42 -- 0.18 0.0373 -- -11 603 -- --
97.32 0.462 6.96 1.07 1.49 -- 0.457 -- 0.191 17.2 -- -- -- --
97.84 0.463 6.96 1.07 1.49 -- -- -- 0.193 17.2 -- -- -- --
142.66 0.556 6.97 0.961 -- 1.42 -- -- 0.0351 -- -10.59 604 -- --
121.88 0.517 6.99 -- 1.42 0.637 -- -- 0.0794 18.1 3.661 92 -- --
213.86 0.683 6.94 1.02 -- -- -- -- 0.156 -- -- -- -- --
128.11 0.529 6.99 -- 1.47 -- -- -- 0.074 17.2 -- -- -- --
166.98 0.602 6.99 -- -- 1.45 -- -- -0.0738 -- -8.178 609 -- --
241.28 0.725 6.97 -- -- -- -- -- 0.0428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.42 temperature 10.0 270 > th dose dependent rect. 6 8
3 74.39 temperature 15.0 90 > th dose dependent rect. 8 7
14 75.83 temperature 15.0 10 > th dose dependent rect. 8 8
28 76.56 temperature 20.0 10 > th dose dependent rect. 9 5
52 77.13 temperature 15.0 270 > th dose independent rect. 15 15
54 77.21 radiation 40.0 270 < th dose dependent rect. 1 9
83 78.06 radiation 20.0 270 < th dose independent rect. 1 8
87 78.16 temperature 20.0 270 > th dose dependent rect. 9 1
93 78.32 temperature 10.0 270 > th dose dependent rect. 20 17
95 78.35 temperature 10.0 270 > th dose dependent rect. 21 15
109 78.79 wind 7.0 270 < th dose independent rect. 6 9
111 78.81 temperature 20.0 270 > th dose independent rect. 6 8
119 78.95 wind 9.0 270 < th dose dependent rect. 7 8
122 78.99 humidity 50.0 270 > th dose dependent rect. 20 5
124 79.01 wind 5.0 270 < th dose independent rect. 1 7
125 79.01 precipitation 0.1 270 < th dose independent rect. 15 15
127 79.01 precipitation 0.1 270 < th dose dependent rect. 15 15
133 79.12 humidity 50.0 270 > th dose dependent rect. 19 7
140 79.16 temperature 30.0 90 < th dose dependent rect. 3 8
142 79.21 precipitation 0.1 270 < th dose independent rect. 1 7
144 79.21 precipitation 0.1 270 < th dose dependent rect. 1 7
155 79.31 precipitation 0.1 270 < th dose independent rect. 6 9
157 79.31 precipitation 0.1 270 < th dose dependent rect. 6 9
160 79.34 temperature 25.0 270 < th dose independent rect. 1 8
164 79.43 atmosphere 1010.0 270 < th dose independent rect. 13 8
167 79.46 radiation 40.0 270 < th dose independent rect. 15 15
168 79.47 precipitation 0.1 270 < th dose independent rect. 2 17
169 79.47 precipitation 0.1 270 < th dose dependent rect. 2 17
170 79.47 wind 9.0 270 < th dose dependent rect. 7 18
175 79.51 atmosphere 1015.0 270 < th dose independent rect. 6 9
178 79.51 temperature 30.0 270 < th dose dependent rect. 1 8
179 79.51 temperature 30.0 90 < th dose dependent rect. 3 10
182 79.55 wind 7.0 270 < th dose independent rect. 19 7
187 79.60 wind 9.0 270 < th dose independent rect. 8 17
190 79.60 temperature 10.0 90 > th dose dependent rect. 8 19
198 79.71 wind 7.0 270 < th dose independent rect. 20 17
199 79.72 temperature 10.0 270 > th dose independent rect. 19 7
200 79.72 temperature 30.0 270 < th dose independent rect. 19 7
201 79.72 humidity 50.0 270 > th dose independent rect. 19 7
202 79.72 atmosphere 995.0 270 > th dose independent rect. 19 7
203 79.72 radiation 1.0 270 < th dose independent rect. 19 7
208 79.72 temperature 10.0 270 > th dose independent rect. 2 17
209 79.72 atmosphere 1015.0 270 < th dose independent rect. 2 17
210 79.72 radiation 1.0 270 < th dose dependent rect. 19 7
218 79.74 temperature 25.0 90 > th dose independent rect. 8 7
228 79.81 atmosphere 995.0 270 > th dose independent rect. 6 9
236 79.85 temperature 30.0 90 < th dose dependent rect. 3 18
238 79.86 wind 9.0 270 < th dose independent rect. 15 15
242 79.86 temperature 10.0 10 > th dose dependent rect. 9 19
253 79.92 temperature 15.0 270 > th dose independent rect. 13 8
259 79.95 temperature 10.0 270 > th dose independent rect. 1 7
262 79.95 humidity 50.0 270 > th dose independent rect. 1 7
264 79.95 atmosphere 995.0 270 > th dose independent rect. 1 7
265 79.95 atmosphere 1015.0 270 < th dose independent rect. 1 7
266 79.95 temperature 10.0 270 > th dose independent rect. 8 17
270 79.97 temperature 30.0 90 < th dose dependent rect. 3 12
275 80.01 atmosphere 1010.0 270 < th dose independent rect. 14 16
287 80.11 precipitation 0.1 270 < th dose independent rect. 19 7
288 80.11 precipitation 0.1 270 < th dose dependent rect. 19 7
295 80.14 radiation 30.0 90 < th dose independent rect. 3 6
307 80.19 wind 7.0 270 < th dose independent rect. 20 5
314 80.22 precipitation 0.1 270 < th dose independent rect. 1 19
315 80.22 precipitation 0.1 270 < th dose dependent rect. 1 19
320 80.25 precipitation 0.1 270 < th dose independent rect. 8 17
322 80.25 precipitation 0.1 270 < th dose dependent rect. 8 17
323 80.26 wind 5.0 90 < th dose independent rect. 3 5
342 80.32 wind 9.0 270 < th dose independent rect. 2 17
343 80.32 radiation 40.0 90 < th dose independent rect. 3 18
345 80.33 temperature 10.0 10 > th dose dependent rect. 22 16
349 80.35 humidity 70.0 90 > th dose independent rect. 3 8
353 80.38 temperature 30.0 90 < th dose dependent rect. 3 16
360 80.41 temperature 30.0 90 < th dose dependent rect. 3 14
362 80.42 atmosphere 995.0 270 > th dose independent rect. 2 17
369 80.45 radiation 1.0 270 > th dose independent rect. 6 8
372 80.46 atmosphere 995.0 270 > th dose independent rect. 15 15
377 80.48 temperature 10.0 270 > th dose independent rect. 20 5
378 80.48 temperature 30.0 270 < th dose independent rect. 20 5
379 80.48 humidity 50.0 270 > th dose independent rect. 20 5
382 80.48 atmosphere 995.0 270 > th dose independent rect. 20 5
383 80.48 radiation 1.0 270 < th dose independent rect. 20 5
388 80.48 temperature 15.0 10 > th dose independent rect. 16 16
390 80.48 temperature 10.0 270 > th dose independent rect. 1 19
391 80.48 atmosphere 1015.0 270 < th dose independent rect. 1 19
392 80.48 radiation 1.0 270 < th dose dependent rect. 20 5
451 80.62 precipitation 0.1 90 < th dose independent rect. 3 5
454 80.62 precipitation 0.1 90 < th dose dependent rect. 3 5
457 80.63 precipitation 0.1 270 < th dose independent rect. 20 5
459 80.63 precipitation 0.1 270 < th dose dependent rect. 20 5
478 80.70 wind 5.0 270 < th dose independent rect. 3 2
486 80.72 temperature 10.0 270 > th dose independent rect. 21 16
487 80.72 atmosphere 995.0 270 > th dose independent rect. 21 16
496 80.73 radiation 40.0 10 < th dose dependent rect. 4 18
520 80.79 temperature 30.0 90 < th dose independent rect. 3 6
555 80.88 temperature 25.0 270 > th dose independent rect. 8 4
559 80.89 wind 1.0 270 > th dose independent rect. 13 7
570 80.93 temperature 10.0 270 > th dose independent rect. 21 14
571 80.93 atmosphere 995.0 270 > th dose independent rect. 21 14
579 80.95 atmosphere 995.0 270 > th dose independent rect. 1 19
600 81.00 wind 9.0 270 < th dose independent rect. 13 7
603 81.01 precipitation 0.1 270 < th dose independent rect. 3 2
607 81.01 wind 9.0 270 < th dose independent rect. 1 19
608 81.01 precipitation 0.1 270 < th dose dependent rect. 3 2
617 81.03 wind 9.0 90 < th dose dependent rect. 3 6
682 81.09 humidity 50.0 270 > th dose independent rect. 21 14
687 81.12 precipitation 0.1 270 < th dose independent rect. 13 7
690 81.12 precipitation 0.1 270 < th dose dependent rect. 13 7
696 81.14 wind 9.0 270 < th dose dependent rect. 1 6
701 81.16 humidity 50.0 270 > th dose independent rect. 6 8
707 81.17 humidity 70.0 90 > th dose independent rect. 3 6
726 81.22 temperature 10.0 90 > th dose independent rect. 3 5
729 81.22 humidity 50.0 90 > th dose independent rect. 3 5
731 81.22 atmosphere 995.0 90 > th dose independent rect. 3 5
732 81.22 atmosphere 1015.0 90 < th dose independent rect. 3 5
739 81.24 temperature 25.0 10 > th dose independent rect. 9 5
743 81.24 radiation 40.0 90 < th dose dependent rect. 3 18
766 81.31 atmosphere 995.0 270 > th dose independent rect. 13 7
773 81.31 radiation 1.0 270 < th dose dependent rect. 12 14
805 81.37 radiation 20.0 10 < th dose independent rect. 4 18
816 81.40 temperature 25.0 270 > th dose independent rect. 9 2
825 81.42 temperature 15.0 1440 > th dose independent rect. 15 8
827 81.43 temperature 15.0 270 > th dose independent rect. 5 22
840 81.44 humidity 50.0 270 > th dose independent rect. 20 17
904 81.54 wind 9.0 270 < th dose dependent rect. 20 5
907 81.55 temperature 30.0 10 < th dose dependent rect. 4 18
911 81.56 wind 7.0 270 < th dose independent rect. 5 22
921 81.59 wind 1.0 270 > th dose independent rect. 1 7
923 81.59 wind 1.0 270 > th dose independent rect. 2 17
934 81.61 wind 9.0 270 < th dose dependent rect. 3 2
935 81.61 temperature 30.0 90 < th dose dependent rect. 3 6
939 81.62 humidity 90.0 90 < th dose independent rect. 8 7
988 81.72 wind 1.0 90 > th dose independent rect. 8 7
995 81.74 wind 1.0 270 > th dose independent rect. 1 19