Os12g0191500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43).
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Os12g0191500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 529.98 | 1.08 | 7.8 | 9.44 | 0.554 | 345 | -3.63 | 711 | -0.0745 | 19.3 | 14.97 | 4325 | -- | -- |
| 589.1 | 1.14 | 3.14 | -1.5 | 0.538 | 5.01 | -3.83 | -- | -0.324 | 18.9 | 14.97 | 4325 | -- | -- |
| 563.09 | 1.11 | 7.8 | 9.45 | 0.559 | 345 | -- | 711 | -0.0905 | 20.5 | 14.97 | 4401 | -- | -- |
| 582.38 | 1.12 | 3.1 | -1.13 | 0.472 | 5.44 | -- | -- | -0.266 | 19 | 15.1 | 1481 | -- | -- |
| 580.57 | 1.12 | 7.8 | 9.47 | -- | 346 | -- | 713 | -0.107 | -- | 14.97 | 4417 | -- | -- |
| 635.98 | 1.18 | 3.15 | -1.72 | 0.59 | -- | -3.9 | -- | -0.377 | 19.5 | -- | -- | -- | -- |
| 675.82 | 1.22 | 3.16 | -1.63 | 0.601 | -- | -- | -- | -0.388 | 20.6 | -- | -- | -- | -- |
| 593.24 | 1.13 | 3.12 | -1.04 | -- | 6.39 | -- | -- | -0.24 | -- | 15.02 | 1473 | -- | -- |
| 576.46 | 1.12 | 3.07 | -- | 0.359 | 5.36 | -- | -- | -0.0638 | 19.9 | 15.1 | 3082 | -- | -- |
| 696.18 | 1.23 | 3.14 | -1.63 | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
| 746.1 | 1.28 | 3.12 | -- | 0.607 | -- | -- | -- | -0.206 | 20.4 | -- | -- | -- | -- |
| 589.86 | 1.13 | 3.07 | -- | -- | 5.45 | -- | -- | -0.0441 | -- | 15.1 | 3075 | -- | -- |
| 766.67 | 1.29 | 3.1 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 525.64 | temperature | 15 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 4 | 527.46 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 27 | 528.39 | temperature | 15 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 44 | 528.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 61 | 529.11 | temperature | 15 | 4320 | < th | dose dependent | sin | 12 | NA |
| 66 | 529.19 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 77 | 529.32 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 100 | 529.79 | temperature | 10 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 130 | 530.36 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 147 | 530.59 | temperature | 15 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 166 | 530.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 12 |
| 179 | 530.93 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 180 | 530.93 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 201 | 531.22 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 206 | 531.28 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 23 |
| 209 | 531.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 220 | 531.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 247 | 532.11 | temperature | 15 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 252 | 532.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 265 | 532.35 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 268 | 532.39 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 271 | 532.43 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 274 | 532.47 | temperature | 15 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 307 | 532.86 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 311 | 532.88 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 316 | 532.93 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 319 | 532.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 330 | 533.09 | temperature | 15 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 331 | 533.09 | temperature | 15 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 341 | 533.16 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 351 | 533.27 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 352 | 533.30 | humidity | 60 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 353 | 533.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 355 | 533.32 | temperature | 15 | 4320 | < th | dose independent | sin | 13 | NA |
| 362 | 533.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 367 | 533.47 | temperature | 15 | 4320 | > th | dose independent | sin | 13 | NA |
| 428 | 534.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 433 | 534.03 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 462 | 534.28 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 483 | 534.50 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 512 | 534.83 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 556 | 535.21 | temperature | 15 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 568 | 535.27 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 687 | 536.32 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 688 | 536.33 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 708 | 536.44 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 714 | 536.48 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 758 | 536.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 789 | 536.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 15 |
| 795 | 536.90 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 820 | 537.07 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 821 | 537.07 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 849 | 537.22 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 913 | 537.53 | temperature | 15 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 925 | 537.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 964 | 537.73 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |