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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0189500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyridine nucleotide-disulphide oxidoreductase, class I family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0172) R2 : 0.013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0886 (0.0362) R2dN8 : 0.0167 R2N8 : 0.013
σ : 0.324
deviance : 48.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.63 0.317 2.91 -0.105 0.0838 -0.235 -0.133 0.949 0.0711 5.29 1.001 16 -- --
46.26 0.319 2.9 -0.0639 0.0955 -0.15 -0.237 -- 0.0817 5.15 1.052 16 -- --
45.62 0.317 2.91 -0.106 0.0861 -0.214 -- 0.843 0.074 5.39 1.001 16 -- --
46.4 0.319 2.9 -0.0633 0.0953 -0.146 -- -- 0.0828 5.33 1.095 16 -- --
45.95 0.317 2.91 -0.109 -- -0.253 -- 0.882 0.076 -- 1.001 16 -- --
46.96 0.321 2.9 -0.0479 0.139 -- -0.203 -- 0.0793 4.95 -- -- -- --
47.07 0.321 2.9 -0.0474 0.138 -- -- -- 0.0803 4.97 -- -- -- --
46.82 0.32 2.9 -0.0649 -- -0.186 -- -- 0.0856 -- 1 16 -- --
46.51 0.319 2.9 -- 0.0959 -0.14 -- -- 0.0897 5.34 1.1 16 -- --
48.07 0.324 2.91 -0.0424 -- -- -- -- 0.0839 -- -- -- -- --
47.13 0.321 2.9 -- 0.137 -- -- -- 0.0856 4.98 -- -- -- --
46.93 0.32 2.9 -- -- -0.18 -- -- 0.0926 -- 1 16 -- --
48.12 0.324 2.9 -- -- -- -- -- 0.0886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.39 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 41.40 temperature 20.0 30 > th dose dependent rect. 2 1
3 41.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 41.42 wind 3.0 30 < th dose dependent rect. 2 1
7 41.44 temperature 20.0 30 > th dose independent rect. 2 1
9 41.44 radiation 10.0 43200 < th dose dependent rect. 3 1
10 41.45 wind 3.0 30 < th dose independent rect. 2 1
15 41.45 temperature 25.0 90 > th dose dependent rect. 1 3
19 41.47 wind 9.0 1440 < th dose independent rect. 3 1
20 41.47 temperature 10.0 1440 > th dose independent rect. 3 1
23 41.47 temperature 30.0 1440 < th dose independent rect. 3 1
27 41.47 humidity 50.0 1440 > th dose independent rect. 3 1
36 41.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 41.47 radiation 1.0 1440 < th dose independent rect. 3 1
57 41.47 temperature 10.0 1440 > th dose independent rect. 4 23
60 41.47 radiation 1.0 1440 < th dose dependent rect. 3 1
74 41.48 humidity 80.0 30 > th dose independent rect. 2 1
77 41.49 temperature 10.0 30 > th dose independent rect. 2 1
79 41.49 temperature 30.0 30 < th dose independent rect. 2 1
80 41.49 humidity 50.0 30 > th dose independent rect. 2 1
83 41.49 atmosphere 995.0 30 > th dose independent rect. 2 1
85 41.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
87 41.49 radiation 1.0 30 < th dose independent rect. 2 1
92 41.49 precipitation 0.1 30 < th dose independent rect. 2 1
93 41.49 temperature 10.0 30 > th dose independent rect. 3 23
94 41.49 humidity 50.0 30 > th dose dependent rect. 2 1
97 41.49 radiation 1.0 30 < th dose dependent rect. 2 1
103 41.49 precipitation 0.1 30 < th dose dependent rect. 2 1
110 41.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
113 41.67 temperature 30.0 30 < th dose dependent rect. 2 1
115 41.71 temperature 25.0 90 > th dose independent rect. 1 3
123 41.75 wind 1.0 30 > th dose independent rect. 2 1
131 41.81 atmosphere 995.0 30 > th dose independent rect. 3 23
139 41.93 precipitation 0.1 30 < th dose independent rect. 3 23
140 41.93 precipitation 0.1 30 < th dose dependent rect. 3 23
178 42.31 wind 9.0 30 < th dose independent rect. 3 23
186 42.98 humidity 50.0 30 > th dose independent rect. 3 23
238 44.05 temperature 30.0 30 < th dose independent rect. 3 23
281 44.30 humidity 90.0 90 < th dose independent rect. 2 1
305 44.51 atmosphere 1015.0 30 < th dose independent rect. 3 23
308 44.53 precipitation 0.1 720 < th dose independent rect. 15 8
309 44.53 precipitation 0.1 720 < th dose dependent rect. 15 8
334 44.79 temperature 25.0 1440 < th dose independent rect. 1 1
337 44.83 precipitation 0.1 720 < th dose independent rect. 11 16
342 44.83 precipitation 0.1 720 < th dose dependent rect. 11 16
344 44.84 wind 1.0 10 < th dose independent rect. 11 16
347 44.85 temperature 10.0 720 > th dose independent rect. 15 8
348 44.85 temperature 10.0 720 > th dose independent rect. 23 16
349 44.85 atmosphere 995.0 720 > th dose independent rect. 23 16
354 44.87 atmosphere 995.0 720 > th dose independent rect. 15 8
363 44.91 wind 1.0 10 < th dose independent rect. 22 5
370 44.92 temperature 10.0 720 > th dose independent rect. 3 8
371 44.92 humidity 50.0 720 > th dose independent rect. 3 8
372 44.92 atmosphere 995.0 720 > th dose independent rect. 3 8
378 44.92 temperature 10.0 720 > th dose independent rect. 11 16
381 44.95 atmosphere 995.0 720 > th dose independent rect. 11 16
395 45.03 wind 9.0 720 < th dose independent rect. 3 8
402 45.07 wind 1.0 720 > th dose independent rect. 15 8
408 45.13 precipitation 0.1 720 < th dose independent rect. 19 8
413 45.13 precipitation 0.1 720 < th dose dependent rect. 19 8
428 45.19 radiation 10.0 30 < th dose dependent rect. 3 23
440 45.24 wind 1.0 10 > th dose independent rect. 8 23
441 45.24 atmosphere 1005.0 30 > th dose dependent rect. 2 6
448 45.28 precipitation 0.1 720 < th dose independent rect. 15 16
450 45.28 precipitation 0.1 720 < th dose dependent rect. 15 16
463 45.33 wind 1.0 10 > th dose independent sin 16 NA
495 45.38 atmosphere 995.0 720 > th dose independent rect. 15 16
501 45.39 atmosphere 1005.0 30 > th dose independent rect. 2 6
509 45.41 precipitation 0.1 720 < th dose independent rect. 3 8
514 45.41 precipitation 0.1 720 < th dose dependent rect. 3 8
522 45.42 wind 9.0 30 < th dose dependent rect. 3 23
524 45.43 atmosphere 995.0 720 > th dose independent rect. 7 8
530 45.44 atmosphere 995.0 720 > th dose independent rect. 3 16
532 45.45 temperature 10.0 720 > th dose independent rect. 7 8
533 45.45 atmosphere 1015.0 720 < th dose independent rect. 7 8
535 45.45 temperature 10.0 720 > th dose independent rect. 15 16
545 45.47 wind 9.0 720 < th dose independent rect. 19 8
546 45.47 wind 1.0 30 > th dose independent rect. 3 23
557 45.48 humidity 50.0 30 > th dose dependent rect. 3 23
562 45.49 temperature 10.0 720 > th dose independent rect. 19 8
563 45.49 temperature 30.0 720 < th dose independent rect. 19 8
564 45.49 humidity 50.0 720 > th dose independent rect. 19 8
565 45.49 atmosphere 995.0 720 > th dose independent rect. 19 8
566 45.49 radiation 1.0 720 < th dose independent rect. 19 8
572 45.49 temperature 10.0 720 > th dose independent rect. 3 16
573 45.49 precipitation 0.1 720 < th dose independent rect. 23 16
577 45.49 radiation 1.0 720 < th dose dependent rect. 19 8
582 45.49 precipitation 0.1 720 < th dose dependent rect. 23 16
590 45.51 humidity 50.0 720 > th dose independent rect. 23 16
595 45.52 radiation 10.0 10 < th dose dependent rect. 5 21
597 45.53 precipitation 0.1 720 < th dose independent rect. 7 8
601 45.53 precipitation 0.1 720 < th dose dependent rect. 7 8
612 45.56 humidity 90.0 90 < th dose independent rect. 1 4
658 45.62 humidity 80.0 4320 < th dose dependent rect. 1 1
692 45.65 temperature 25.0 270 < th dose independent sin 10 NA
694 45.65 temperature 25.0 720 < th dose independent rect. 22 7
707 45.66 temperature 25.0 270 < th dose independent rect. 21 9
711 45.66 radiation 10.0 30 < th dose independent rect. 3 23
748 45.68 atmosphere 1005.0 90 < th dose independent rect. 3 3
751 45.68 humidity 90.0 90 < th dose independent rect. 1 7
756 45.68 atmosphere 995.0 30 > th dose dependent rect. 3 23
771 45.70 wind 9.0 720 < th dose independent rect. 23 16
772 45.70 wind 1.0 10 > th dose independent rect. 5 23
775 45.71 temperature 25.0 270 > th dose independent sin 10 NA
793 45.72 atmosphere 1005.0 10 < th dose independent rect. 4 2
830 45.73 temperature 25.0 720 > th dose dependent rect. 20 6
850 45.74 radiation 40.0 30 < th dose dependent rect. 14 12
871 45.75 wind 1.0 10 > th dose independent rect. 23 12
920 45.77 atmosphere 1005.0 90 < th dose independent rect. 4 1
931 45.77 radiation 10.0 10 < th dose dependent rect. 15 11
938 45.78 radiation 40.0 720 < th dose independent rect. 15 8
949 45.78 radiation 10.0 10 < th dose dependent rect. 11 15
967 45.80 humidity 80.0 4320 < th dose independent rect. 1 1
979 45.80 atmosphere 1015.0 720 < th dose independent rect. 3 8
985 45.80 wind 5.0 270 > th dose dependent rect. 2 3
997 45.81 radiation 10.0 30 < th dose independent rect. 14 12
999 45.81 wind 5.0 270 > th dose dependent rect. 2 1