Os12g0189400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem I reaction centre subunit N, chloroplast precursor (PSI- N).
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Os12g0189400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem I reaction centre subunit N, chloroplast precursor (PSI- N).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.41 | 0.416 | 16.4 | -1.2 | 1.86 | -0.475 | 1.48 | -1.32 | -0.247 | 6.48 | 49.92 | 4408 | -- | -- |
| 81.52 | 0.421 | 16.3 | -1.1 | 1.85 | -0.62 | 1.64 | -- | -0.221 | 6.55 | 49.99 | 4390 | -- | -- |
| 82.93 | 0.424 | 16.4 | -1.28 | 1.88 | -0.621 | -- | -1.91 | -0.224 | 6.65 | 49.05 | 4628 | -- | -- |
| 84.21 | 0.427 | 16.3 | -1.12 | 1.86 | -0.825 | -- | -- | -0.279 | 6.59 | 48 | 4386 | -- | -- |
| 258.82 | 0.749 | 16.4 | -1.22 | -- | -0.595 | -- | -2.61 | -0.182 | -- | 51 | 4889 | -- | -- |
| 95 | 0.457 | 16.3 | -1.46 | 1.86 | -- | 1.47 | -- | -0.179 | 6.54 | -- | -- | -- | -- |
| 100.34 | 0.469 | 16.3 | -1.44 | 1.87 | -- | -- | -- | -0.183 | 6.6 | -- | -- | -- | -- |
| 138.44 | 0.548 | 16.4 | -1.25 | -- | -1.73 | -- | -- | -0.11 | -- | 75 | 522 | -- | -- |
| 110.9 | 0.49 | 16.3 | -- | 2.01 | -1.14 | -- | -- | -0.168 | 6.38 | 48 | 4381 | -- | -- |
| 282.14 | 0.785 | 16.4 | -1.39 | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
| 154.62 | 0.582 | 16.3 | -- | 1.85 | -- | -- | -- | -0.0234 | 6.65 | -- | -- | -- | -- |
| 180.49 | 0.626 | 16.3 | -- | -- | -1.87 | -- | -- | 0.0656 | -- | 72.7 | 543 | -- | -- |
| 333.12 | 0.852 | 16.3 | -- | -- | -- | -- | -- | 0.00892 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.60 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 4 | 66.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 7 | 67.20 | humidity | 50.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 10 | 67.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 20 | 68.69 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 19 |
| 48 | 70.76 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 62 | 71.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 65 | 71.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 66 | 71.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 102 | 72.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 110 | 72.58 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 118 | 72.87 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 125 | 73.17 | radiation | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 132 | 73.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 135 | 73.28 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 10 | 6 |
| 136 | 73.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 137 | 73.28 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 144 | 73.34 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 150 | 73.43 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 153 | 73.48 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 158 | 73.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 162 | 73.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 170 | 73.70 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 173 | 73.75 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 193 | 73.94 | wind | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 194 | 73.94 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 197 | 74.01 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 202 | 74.06 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 19 |
| 209 | 74.17 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 210 | 74.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 18 |
| 211 | 74.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 18 |
| 213 | 74.20 | wind | 1.0 | 30 | > th | dose dependent | rect. | 16 | 5 |
| 221 | 74.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 249 | 74.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 1 |
| 259 | 74.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 262 | 74.78 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 268 | 74.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 19 |
| 271 | 74.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 277 | 74.86 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 286 | 74.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 289 | 75.01 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 295 | 75.04 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 296 | 75.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 298 | 75.06 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 300 | 75.06 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 301 | 75.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 303 | 75.07 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 304 | 75.07 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 306 | 75.09 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 310 | 75.12 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 319 | 75.14 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 321 | 75.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 5 |
| 323 | 75.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 5 |
| 332 | 75.20 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 333 | 75.20 | wind | 1.0 | 30 | > th | dose independent | rect. | 16 | 5 |
| 340 | 75.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 4 |
| 342 | 75.25 | humidity | 90.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 343 | 75.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 346 | 75.27 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 352 | 75.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 354 | 75.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 20 |
| 355 | 75.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 20 |
| 356 | 75.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 360 | 75.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 361 | 75.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 362 | 75.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 20 |
| 364 | 75.34 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 365 | 75.34 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 19 |
| 372 | 75.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 373 | 75.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 390 | 75.51 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 392 | 75.52 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 19 |
| 394 | 75.52 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 19 |
| 398 | 75.54 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 404 | 75.58 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 406 | 75.59 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 413 | 75.63 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 420 | 75.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 20 |
| 432 | 75.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 433 | 75.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 437 | 75.82 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 455 | 75.93 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 461 | 75.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 464 | 75.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 468 | 75.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 471 | 75.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 18 |
| 473 | 75.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 481 | 76.04 | humidity | 90.0 | 270 | < th | dose independent | rect. | 10 | 3 |
| 487 | 76.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 512 | 76.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 514 | 76.20 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 524 | 76.29 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 527 | 76.29 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 532 | 76.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 538 | 76.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 1 |
| 539 | 76.32 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 540 | 76.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 542 | 76.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 543 | 76.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 547 | 76.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 548 | 76.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 549 | 76.33 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 550 | 76.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 554 | 76.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 557 | 76.34 | radiation | 40.0 | 90 | < th | dose independent | rect. | 16 | 17 |
| 564 | 76.36 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 568 | 76.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 580 | 76.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 582 | 76.44 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 584 | 76.44 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 586 | 76.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 588 | 76.44 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 599 | 76.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 600 | 76.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 616 | 76.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 638 | 76.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 647 | 76.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 654 | 76.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 664 | 76.75 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 669 | 76.76 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 670 | 76.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 677 | 76.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 678 | 76.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 693 | 76.82 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 747 | 76.93 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 753 | 76.95 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 776 | 76.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 780 | 77.00 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 817 | 77.04 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 819 | 77.05 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 866 | 77.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 867 | 77.15 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 871 | 77.17 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 906 | 77.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 3 |
| 923 | 77.27 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 15 |
| 941 | 77.30 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 966 | 77.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 999 | 77.40 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 15 | 21 |