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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0187800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0506) R2 : 0.813
β1 : -2.21 (0.242) R2dD : 0.068 R2D : 0.221
β2 : 1.1 (0.123) R2dC : 0.0348 R2C : 0.0279
β3 : 3.37 (0.124) R2dE : 0.363 R2E : 0.473
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.6 (0.45) R2dD*E : 0.126 R2D*E : 0.285
γ1 : -0.294 (0.116) R2dN8 : 0.00443 R2N8 : 0.0225
σ : 0.888
deviance : 363.53
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_____
C
peak time of C : 7
E
wheather : temperature
threshold : 20
memory length : 1451
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 1.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.67 0.876 4.16 -2.05 1.14 3.21 -2.66 -5.51 -0.268 7.15 20 1446 5.05 1.37
487.35 1.03 4.33 -3.96 1.19 4.57 -2.22 -- -0.535 6.01 20 1484 5.1 1.39
363.53 0.888 4.16 -2.21 1.1 3.37 -- -5.6 -0.294 7 20 1451 5.02 1.38
460.04 0.999 4.23 -3.63 0.876 4.87 -- -- -0.471 5.9 19.82 1823 5.07 1.45
425.83 0.961 4.21 -2.36 -- 3.53 -- -5.95 -0.375 -- 20 1460 5.12 1.33
1029.64 1.5 4.58 -5.22 1.1 -- -2.08 -- -1.79 7.42 -- -- -- --
1041.52 1.51 4.57 -5.27 1.1 -- -- -- -1.78 7.37 -- -- -- --
477.63 1.02 4.33 -4.05 -- 4.55 -- -- -0.7 -- 19.8 1822 5.14 1.29
800.98 1.32 4.24 -- 0.834 4.64 -- -- -0.328 5.8 19.8 3310 5.1 1.72
1106.17 1.55 4.6 -5.25 -- -- -- -- -1.76 -- -- -- -- --
1773.25 1.97 4.44 -- 1.06 -- -- -- -1.2 7.7 -- -- -- --
687.66 1.22 4.38 -- -- 6.98 -- -- -0.818 -- 20.32 3145 5.71 3.65
1833.47 2 4.47 -- -- -- -- -- -1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 360.52 temperature 20 1440 < th dose independent rect. 5 1
2 374.89 temperature 20 1440 > th dose independent rect. 5 2
19 423.79 temperature 20 4320 > th dose independent rect. 22 1
22 426.14 temperature 20 1440 < th dose independent rect. 22 9
24 427.99 temperature 20 1440 > th dose independent rect. 21 10
28 429.22 temperature 20 4320 < th dose independent rect. 22 1
32 430.64 temperature 25 720 < th dose dependent rect. 19 14
51 435.77 temperature 15 720 > th dose dependent sin 10 NA
56 436.36 temperature 15 720 > th dose dependent rect. 19 14
60 436.81 temperature 15 1440 > th dose dependent rect. 3 2
62 437.16 temperature 25 1440 < th dose dependent rect. 3 2
69 437.83 temperature 25 720 < th dose dependent sin 10 NA
142 445.55 temperature 15 720 > th dose dependent rect. 21 9
146 446.13 temperature 20 720 > th dose independent sin 10 NA
184 449.98 atmosphere 1015 43200 < th dose independent rect. 18 2
204 451.65 temperature 20 720 > th dose independent rect. 19 16
207 451.77 radiation 40 14400 < th dose independent rect. 7 1
208 451.80 radiation 40 14400 < th dose independent rect. 4 4
221 452.41 radiation 40 14400 < th dose independent rect. 20 12
227 452.66 radiation 40 14400 < th dose independent rect. 18 14
229 452.70 radiation 40 14400 < th dose independent rect. 1 7
246 453.43 radiation 40 14400 < th dose independent rect. 22 10
250 453.71 temperature 20 720 < th dose independent sin 10 NA
275 454.86 atmosphere 1015 43200 > th dose dependent rect. 20 1
340 458.17 atmosphere 1015 43200 > th dose independent rect. 14 7
370 459.25 temperature 20 4320 < th dose independent rect. 18 9
417 461.46 atmosphere 1015 43200 > th dose dependent rect. 18 4
475 464.43 atmosphere 1015 43200 > th dose dependent rect. 13 9
510 465.68 atmosphere 1015 43200 > th dose independent rect. 14 1
590 468.26 atmosphere 1015 43200 > th dose independent rect. 18 2
622 469.14 radiation 30 14400 > th dose dependent rect. 7 1
673 470.32 atmosphere 1015 43200 > th dose dependent rect. 13 2
727 472.14 humidity 90 43200 < th dose independent rect. 10 1
769 473.38 temperature 15 43200 > th dose independent rect. 3 1
778 473.55 humidity 90 43200 > th dose independent rect. 9 2
865 476.44 temperature 15 43200 < th dose independent rect. 1 3