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Os12g0183300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0191) R2 : 0.472
β1 : -0.905 (0.0698) R2dD : 0.202 R2D : -0.0125
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.72 (0.0407) R2dN8 : 0.485 R2N8 : 0.271
σ : 0.358
deviance : 58.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.32 0.283 11.5 -0.637 0.476 -0.542 0.233 0.493 -0.581 13.8 20.4 196 -- --
37.26 0.284 11.5 -0.712 0.482 -0.58 0.365 -- -0.574 13.7 20.5 185 -- --
36.48 0.281 11.5 -0.622 0.478 -0.534 -- 0.565 -0.578 13.8 20.43 185 -- --
37.85 0.287 11.6 -0.715 0.488 -0.583 -- -- -0.599 13.8 20.42 185 -- --
45.45 0.314 11.5 -0.447 -- -0.694 -- 0.998 -0.538 -- 19.4 1807 -- --
49.39 0.329 11.6 -0.903 0.376 -- 0.404 -- -0.714 13.6 -- -- -- --
50.04 0.331 11.6 -0.889 0.376 -- -- -- -0.711 13.7 -- -- -- --
46.53 0.318 11.5 -0.559 -- -0.943 -- -- -0.569 -- 19.02 1827 -- --
48.15 0.323 11.5 -- 0.502 -0.956 -- -- -0.506 14.2 19.35 263 -- --
58.65 0.358 11.6 -0.905 -- -- -- -- -0.72 -- -- -- -- --
70.88 0.394 11.6 -- 0.392 -- -- -- -0.612 13.8 -- -- -- --
49.87 0.329 11.5 -- -- -1.17 -- -- -0.442 -- 18.65 8283 -- --
80.23 0.418 11.6 -- -- -- -- -- -0.619 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.06 temperature 20 30 > th dose independent rect. 9 21
3 34.36 temperature 20 270 > th dose independent rect. 7 22
23 36.14 temperature 20 10 > th dose independent rect. 20 10
32 36.47 temperature 20 30 > th dose independent rect. 11 19
34 36.58 temperature 20 270 > th dose independent rect. 17 23
41 36.79 temperature 20 270 < th dose independent rect. 9 23
43 36.80 temperature 20 270 > th dose independent rect. 20 23
48 36.86 temperature 20 270 < th dose independent rect. 13 22
62 36.95 temperature 10 4320 > th dose dependent rect. 10 1
65 36.97 temperature 20 30 > th dose independent rect. 20 23
72 37.04 temperature 20 270 > th dose independent no NA NA
89 37.15 temperature 20 270 < th dose independent no NA NA
104 37.20 temperature 15 4320 > th dose dependent rect. 9 5
107 37.22 temperature 20 270 < th dose independent rect. 6 23
114 37.23 temperature 30 4320 < th dose dependent rect. 9 2
119 37.26 temperature 20 30 > th dose independent no NA NA
124 37.28 temperature 20 10 > th dose independent rect. 22 8
125 37.28 temperature 20 270 < th dose independent rect. 3 23
165 37.39 temperature 20 720 < th dose independent rect. 9 16
172 37.39 temperature 25 270 < th dose dependent rect. 10 22
178 37.42 temperature 20 4320 > th dose independent rect. 18 1
188 37.44 temperature 25 270 < th dose dependent rect. 15 18
200 37.45 humidity 80 14400 > th dose dependent rect. 13 1
218 37.47 temperature 20 30 < th dose independent rect. 7 23
228 37.48 temperature 20 30 < th dose independent rect. 9 23
230 37.48 temperature 15 4320 > th dose dependent rect. 13 1
234 37.49 temperature 20 30 < th dose independent rect. 19 23
235 37.49 temperature 20 30 < th dose independent rect. 21 23
236 37.49 temperature 20 270 < th dose independent rect. 21 23
240 37.50 temperature 20 30 < th dose independent rect. 1 23
241 37.50 temperature 20 30 < th dose independent rect. 23 23
247 37.51 temperature 20 30 < th dose independent rect. 3 23
253 37.52 wind 1 43200 < th dose dependent rect. 8 18
264 37.54 wind 1 14400 > th dose dependent rect. 23 1
279 37.57 temperature 20 4320 < th dose independent rect. 18 1
303 37.61 wind 1 43200 > th dose dependent rect. 5 1
320 37.64 wind 9 43200 < th dose dependent rect. 5 1
321 37.64 humidity 60 43200 > th dose dependent rect. 19 4
332 37.66 humidity 80 43200 < th dose independent rect. 19 20
342 37.68 humidity 80 43200 > th dose independent rect. 19 19
356 37.69 humidity 60 43200 > th dose dependent rect. 18 18
375 37.72 temperature 20 1440 > th dose independent rect. 5 21
395 37.74 temperature 20 1440 < th dose independent rect. 5 21
411 37.75 humidity 60 43200 > th dose dependent rect. 18 6
415 37.76 temperature 20 270 < th dose independent sin 12 NA
436 37.77 humidity 80 43200 > th dose independent rect. 14 20
482 37.81 temperature 20 270 > th dose independent sin 12 NA
507 37.83 temperature 20 4320 < th dose independent rect. 17 4
508 37.83 temperature 20 4320 > th dose independent rect. 12 10
511 37.83 temperature 20 1440 > th dose independent rect. 3 21
529 37.85 temperature 20 1440 < th dose independent rect. 3 21
558 37.87 temperature 20 1440 < th dose independent rect. 22 22
570 37.88 temperature 20 720 > th dose independent sin 17 NA
584 37.88 temperature 20 1440 > th dose independent rect. 22 22
592 37.88 wind 9 14400 < th dose dependent rect. 23 1
593 37.88 humidity 70 43200 > th dose dependent rect. 21 1
650 37.91 temperature 20 1440 < th dose independent rect. 9 23
657 37.92 temperature 20 720 < th dose independent sin 18 NA
658 37.92 humidity 90 14400 > th dose independent rect. 13 1
661 37.92 humidity 80 43200 < th dose independent rect. 14 20
667 37.92 temperature 20 1440 > th dose independent rect. 9 23
668 37.92 humidity 50 43200 > th dose dependent sin 6 NA
678 37.93 temperature 20 1440 < th dose independent no NA NA
679 37.93 wind 1 43200 > th dose independent rect. 14 1
683 37.93 temperature 20 4320 > th dose independent rect. 9 14
692 37.93 temperature 20 1440 < th dose independent rect. 19 23
700 37.94 temperature 20 1440 > th dose independent no NA NA
714 37.94 temperature 20 1440 > th dose independent rect. 19 23
723 37.95 temperature 20 4320 < th dose independent rect. 12 10
749 37.96 humidity 80 43200 < th dose independent rect. 24 12
778 37.97 temperature 20 1440 > th dose independent rect. 14 23
780 37.97 temperature 20 1440 < th dose independent rect. 11 23
795 37.97 humidity 90 43200 < th dose dependent rect. 21 18
812 37.98 temperature 20 1440 > th dose independent rect. 11 23
823 37.98 humidity 90 43200 < th dose dependent rect. 22 16
831 37.99 humidity 80 43200 < th dose independent sin 6 NA
862 38.00 humidity 80 43200 > th dose independent rect. 1 11
885 38.01 temperature 20 4320 < th dose independent rect. 9 14
910 38.02 temperature 20 1440 < th dose independent sin 3 NA
936 38.03 temperature 20 720 < th dose independent rect. 13 12
939 38.03 temperature 20 1440 < th dose independent rect. 1 17
946 38.03 temperature 20 1440 < th dose independent rect. 1 19
972 38.04 temperature 20 1440 > th dose independent sin 3 NA
973 38.04 humidity 80 43200 > th dose independent sin 6 NA
974 38.04 humidity 90 14400 < th dose independent rect. 13 1
975 38.04 humidity 80 43200 > th dose independent rect. 3 8